PlantSME Plant secondary metabolism enzyme database

Catagonium nitens (catagonium_nitens)

Imported from atlas release summary for Catagonium nitens.

630
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.87% Terpenoid pathway 23.02% Alkaloid pathway 20.32% Flavonoid pathway 12.7% Rosmarinic acid pathway 10.63% Steroid pathway 7.46%
Family Distribution
C4H 7.3% C3'H/CYP98A 6.08% POD 5.6% BAHD 5.41% 4CL 4.44% CYP76 4.26% NMT 3.59% IFS 3.59%
Other Families 59.73%
More Families (95)
PAL 45 2.74% BR6OX2/CYP85A2 45 2.74% T3O 44 2.68% F3H 41 2.49% IFR 39 2.37% STR 38 2.31% F3'H/CYP75B 38 2.31% DWF4/CYP90B1 35 2.13% GS 29 1.76% PYKS 29 1.76% CODM/T6ODM 26 1.58% IO 25 1.52% UGT 23 1.4% UFGT 21 1.28% 7DLGT 20 1.22% SMT1/SMT2/SMT3 20 1.22% CAD 19 1.16% CHS 17 1.03% CYP71 17 1.03% 7DLH 16 0.97% H6H 16 0.97% CAS 15 0.91% SLS 14 0.85% COMT 14 0.85% CYP90D1 14 0.85% F3'5'H/CYP75A 13 0.79% TRI/TRII 12 0.73% CPD/CYP90A1 12 0.73% G8O/G8H 11 0.67% FNS 11 0.67% NCS 10 0.61% HCT 10 0.61% LAC 10 0.61% CSE 10 0.61% 8HGO 9 0.55% T16H 9 0.55% CYP80B1 9 0.55% RAS 8 0.49% DWF5 8 0.49% SGD 7 0.43% LAMT 7 0.43% 16OMT 7 0.43% CNMT 7 0.43% SMO1/SMO2 7 0.43% ANR 6 0.36% CCR 6 0.36% F5H/CYP84A 6 0.36% CPR 6 0.36% ROT3/CYP90C1 6 0.36% SQS/FDFT1 6 0.36% COR 5 0.3% TDC 5 0.3% MPO 5 0.3% BBE 5 0.3% GGPPS 5 0.3% AACT 5 0.3% DFR 4 0.24% TAT 4 0.24% DET2 4 0.24% PMT 3 0.18% TYDC_DDC 3 0.18% CHI 3 0.18% FLS 3 0.18% CYP51G1 3 0.18% BR6OX1/CYP85A1 3 0.18% MVD 3 0.18% MVK 3 0.18% 6OMT_4OMT_SOMT 2 0.12% ADC 2 0.12% CYP719 2 0.12% XMT_MXMT_DXMT 2 0.12% CCoAOMT 2 0.12% FK 2 0.12% SQE 2 0.12% FPPS 2 0.12% CMK/IspE 2 0.12% MDS/IspF 2 0.12% HDR/IspH 2 0.12% TPS 2 0.12% PMK 2 0.12% MCT/IspD 2 0.12% HDS/IspG 2 0.12% ISY 1 0.06% CYP80F1 1 0.06% GES 1 0.06% HPPR 1 0.06% DWF7 1 0.06% DWF1 1 0.06% CPI1 1 0.06% HYD1 1 0.06% IDI 1 0.06% DXR 1 0.06% HMGS 1 0.06% DXS 1 0.06% HMGR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 163 11 POD (86) View species results
Terpenoid pathway 145 19 BAHD (63) View species results
Alkaloid pathway 128 17 NMT (27) View species results
Flavonoid pathway 80 10 UFGT (18) View species results
Rosmarinic acid pathway 67 7 C4H (27) View species results
Steroid pathway 47 13 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 672 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 107 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Cnit1722720013520 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cnit2358150069700 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cnit2387190078840 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cnit2504870125500 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cnit2505160125850 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cnit2507870127640 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cnit2558360162340 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cnit2580160187120 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Cnit2615020238270 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Cnit2625610246060 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA