PlantSME Plant secondary metabolism enzyme database

Ceriops zippeliana (ceriops_zippeliana)

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Imported from atlas release summary for Ceriops zippeliana.

1091
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.8% Phenylpropanoid pathway 20.26% Alkaloid pathway 19.71% Flavonoid pathway 13.84% Rosmarinic acid pathway 9.9% Steroid pathway 5.5%
Family Distribution
BAHD 6.39% C4H 6.35% C3'H/CYP98A 5.68% 4CL 4.65% UGT 3.99% POD 3.8% CYP76 3.8% 7DLGT 3.65%
Other Families 61.68%
More Families (94)
UFGT 97 3.58% T3O 91 3.36% IFS 84 3.1% F3H 67 2.47% NMT 60 2.21% DWF4/CYP90B1 58 2.14% F3'H/CYP75B 57 2.1% BR6OX2/CYP85A2 50 1.85% CAD 49 1.81% STR 48 1.77% CODM/T6ODM 48 1.77% CYP71 41 1.51% CAS 37 1.37% IFR 35 1.29% SMT1/SMT2/SMT3 35 1.29% HCT 34 1.26% TPS 29 1.07% PYKS 27 1.0% G8O/G8H 27 1.0% GES 27 1.0% H6H 26 0.96% PMT 26 0.96% FNS 25 0.92% LAC 24 0.89% GS 23 0.85% CSE 23 0.85% IO 22 0.81% T16H 21 0.78% TAT 21 0.78% TRI/TRII 20 0.74% SGD 20 0.74% F3'5'H/CYP75A 20 0.74% CYP90D1 20 0.74% RAS 19 0.7% COMT 17 0.63% CPD/CYP90A1 17 0.63% ANR 16 0.59% PAL 15 0.55% SLS 13 0.48% ANS/LDOX 13 0.48% CCR 13 0.48% F5H/CYP84A 13 0.48% CYP51G1 13 0.48% 7DLH 12 0.44% BR6OX1/CYP85A1 12 0.44% NCS 11 0.41% 16OMT 11 0.41% 8HGO 10 0.37% LAMT 9 0.33% ROT3/CYP90C1 9 0.33% COR 8 0.3% CNMT 8 0.3% CHS 8 0.3% MPO 7 0.26% DFR 7 0.26% CPR 7 0.26% AACT 7 0.26% BBE 6 0.22% CCoAOMT 5 0.18% SQS/FDFT1 5 0.18% DXS 5 0.18% GGPPS 5 0.18% MVK 5 0.18% CYP80B1 4 0.15% CYP719 4 0.15% 6OMT_4OMT_SOMT 4 0.15% HPPR 4 0.15% SQE 4 0.15% MVD 4 0.15% HMGR 4 0.15% FPPS 4 0.15% TDC 3 0.11% CHI 3 0.11% DET2 3 0.11% SMO1/SMO2 3 0.11% IDI 3 0.11% ISY 2 0.07% TYDC_DDC 2 0.07% ADC 2 0.07% DXR 2 0.07% HDS/IspG 2 0.07% MDS/IspF 2 0.07% HMGS 2 0.07% HDR/IspH 2 0.07% ODC 1 0.04% DWF1 1 0.04% FK 1 0.04% DWF7 1 0.04% CPI1 1 0.04% DWF5 1 0.04% HYD1 1 0.04% PMK 1 0.04% CMK/IspE 1 0.04% MCT/IspD 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 336 19 BAHD (136) View species results
Phenylpropanoid pathway 221 11 POD (94) View species results
Alkaloid pathway 215 21 7DLGT (37) View species results
Flavonoid pathway 151 9 UFGT (88) View species results
Rosmarinic acid pathway 108 7 C4H (41) View species results
Steroid pathway 60 12 CAS (27) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1017 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 226 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
ceriops_zippeliana_evm.model.Scaffold_12_RagTag.277 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_14_RagTag.529 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_1_RagTag.1198 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_1_RagTag.1201 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_1_RagTag.1248 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_1_RagTag.1324 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_1_RagTag.1327 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_2_RagTag.737 Phenylpropanoid COMT low borderline
ceriops_zippeliana_evm.model.Scaffold_3_RagTag.1808 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_3_RagTag.1821 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_3_RagTag.1861 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_3_RagTag.51 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_3_RagTag.52 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_3_RagTag.708 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_7_RagTag.1599 Phenylpropanoid COMT low borderline
ceriops_zippeliana_evm.model.Scaffold_9_RagTag.1114 Phenylpropanoid COMT medium pass
ceriops_zippeliana_evm.model.Scaffold_9_RagTag.1116 Phenylpropanoid COMT medium pass