Ceriops zippeliana (ceriops_zippeliana)
/
Imported from atlas release summary for Ceriops zippeliana.
1091
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1091
Candidate Genes
BAHD
6.39%
C4H
6.35%
C3'H/CYP98A
5.68%
4CL
4.65%
UGT
3.99%
POD
3.8%
CYP76
3.8%
7DLGT
3.65%
Other Families
61.68%
More Families (94)
UFGT
97
3.58%
T3O
91
3.36%
IFS
84
3.1%
F3H
67
2.47%
NMT
60
2.21%
DWF4/CYP90B1
58
2.14%
F3'H/CYP75B
57
2.1%
BR6OX2/CYP85A2
50
1.85%
CAD
49
1.81%
STR
48
1.77%
CODM/T6ODM
48
1.77%
CYP71
41
1.51%
CAS
37
1.37%
IFR
35
1.29%
SMT1/SMT2/SMT3
35
1.29%
HCT
34
1.26%
TPS
29
1.07%
PYKS
27
1.0%
G8O/G8H
27
1.0%
GES
27
1.0%
H6H
26
0.96%
PMT
26
0.96%
FNS
25
0.92%
LAC
24
0.89%
GS
23
0.85%
CSE
23
0.85%
IO
22
0.81%
T16H
21
0.78%
TAT
21
0.78%
TRI/TRII
20
0.74%
SGD
20
0.74%
F3'5'H/CYP75A
20
0.74%
CYP90D1
20
0.74%
RAS
19
0.7%
COMT
17
0.63%
CPD/CYP90A1
17
0.63%
ANR
16
0.59%
PAL
15
0.55%
SLS
13
0.48%
ANS/LDOX
13
0.48%
CCR
13
0.48%
F5H/CYP84A
13
0.48%
CYP51G1
13
0.48%
7DLH
12
0.44%
BR6OX1/CYP85A1
12
0.44%
NCS
11
0.41%
16OMT
11
0.41%
8HGO
10
0.37%
LAMT
9
0.33%
ROT3/CYP90C1
9
0.33%
COR
8
0.3%
CNMT
8
0.3%
CHS
8
0.3%
MPO
7
0.26%
DFR
7
0.26%
CPR
7
0.26%
AACT
7
0.26%
BBE
6
0.22%
CCoAOMT
5
0.18%
SQS/FDFT1
5
0.18%
DXS
5
0.18%
GGPPS
5
0.18%
MVK
5
0.18%
CYP80B1
4
0.15%
CYP719
4
0.15%
6OMT_4OMT_SOMT
4
0.15%
HPPR
4
0.15%
SQE
4
0.15%
MVD
4
0.15%
HMGR
4
0.15%
FPPS
4
0.15%
TDC
3
0.11%
CHI
3
0.11%
DET2
3
0.11%
SMO1/SMO2
3
0.11%
IDI
3
0.11%
ISY
2
0.07%
TYDC_DDC
2
0.07%
ADC
2
0.07%
DXR
2
0.07%
HDS/IspG
2
0.07%
MDS/IspF
2
0.07%
HMGS
2
0.07%
HDR/IspH
2
0.07%
ODC
1
0.04%
DWF1
1
0.04%
FK
1
0.04%
DWF7
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MCT/IspD
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 336 | 19 | BAHD (136) | View species results |
| Phenylpropanoid pathway | 221 | 11 | POD (94) | View species results |
| Alkaloid pathway | 215 | 21 | 7DLGT (37) | View species results |
| Flavonoid pathway | 151 | 9 | UFGT (88) | View species results |
| Rosmarinic acid pathway | 108 | 7 | C4H (41) | View species results |
| Steroid pathway | 60 | 12 | CAS (27) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1017 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 226 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| ceriops_zippeliana_evm.model.Scaffold_10_RagTag.1084 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_10_RagTag.71 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_10_RagTag.723 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_10_RagTag.841 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_10_RagTag.842 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_11_RagTag.1192 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_11_RagTag.1469 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_11_RagTag.1471 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_11_RagTag.336 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_11_RagTag.636 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_12_RagTag.1133 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_12_RagTag.715 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ceriops_zippeliana_evm.model.Scaffold_12_RagTag.814 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_14_RagTag.104 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_14_RagTag.64 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_14_RagTag.807 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_15_RagTag.1019 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_17_RagTag.147 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_18_RagTag.536 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_18_RagTag.537 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_18_RagTag.99 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_1_RagTag.138 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_1_RagTag.168 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_2_RagTag.1417 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_3368_RagTag.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_3_RagTag.1023 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_3_RagTag.1333 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_3_RagTag.765 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_4_RagTag.1129 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_4_RagTag.1596 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_4_RagTag.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_4_RagTag.2289 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| ceriops_zippeliana_evm.model.Scaffold_5_RagTag.1575 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_5_RagTag.1576 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_5_RagTag.2112 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_5_RagTag.716 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_5_RagTag.76 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ceriops_zippeliana_evm.model.Scaffold_6_RagTag.40 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_722_RagTag.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_7_RagTag.797 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_8_RagTag.1100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_8_RagTag.1185 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_8_RagTag.1256 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_8_RagTag.674 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_9_RagTag.1154 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_9_RagTag.1225 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| ceriops_zippeliana_evm.model.Scaffold_9_RagTag.1494 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| ceriops_zippeliana_evm.model.contig_145217.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |