Chamaecrista fasciculata (chamaecrista_fasciculata)
Imported from atlas release summary for Chamaecrista fasciculata.
1382
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1382
Candidate Genes
C4H
6.22%
C3'H/CYP98A
5.47%
UGT
4.9%
BAHD
4.77%
7DLGT
4.55%
UFGT
4.36%
IFS
3.66%
CYP76
3.63%
Other Families
62.44%
More Families (95)
T3O
107
2.88%
4CL
105
2.83%
F3H
104
2.8%
POD
102
2.75%
DWF4/CYP90B1
74
1.99%
F3'H/CYP75B
70
1.88%
BR6OX2/CYP85A2
70
1.88%
NMT
67
1.8%
PYKS
66
1.78%
STR
64
1.72%
H6H
63
1.7%
CYP71
63
1.7%
CAD
56
1.51%
CODM/T6ODM
55
1.48%
COMT
52
1.4%
TRI/TRII
50
1.35%
LAC
50
1.35%
SMT1/SMT2/SMT3
49
1.32%
CAS
49
1.32%
CSE
44
1.18%
T16H
36
0.97%
CHS
36
0.97%
CYP90D1
36
0.97%
16OMT
34
0.92%
G8O/G8H
32
0.86%
F5H/CYP84A
32
0.86%
TPS
32
0.86%
GS
31
0.83%
GES
30
0.81%
SGD
30
0.81%
F3'5'H/CYP75A
28
0.75%
IFR
27
0.73%
LAMT
26
0.7%
IO
25
0.67%
RAS
24
0.65%
7DLH
23
0.62%
FNS
23
0.62%
TAT
21
0.57%
HCT
20
0.54%
PMT
19
0.51%
ANS/LDOX
19
0.51%
BR6OX1/CYP85A1
19
0.51%
PAL
18
0.48%
CCR
18
0.48%
NCS
17
0.46%
SLS
17
0.46%
CYP51G1
17
0.46%
ANR
16
0.43%
8HGO
14
0.38%
CPD/CYP90A1
14
0.38%
DFR
13
0.35%
BBE
12
0.32%
ISY
11
0.3%
CNMT
10
0.27%
COR
10
0.27%
ROT3/CYP90C1
10
0.27%
GGPPS
10
0.27%
CYP719
9
0.24%
CPR
9
0.24%
SQS/FDFT1
9
0.24%
TDC
7
0.19%
CYP80B1
7
0.19%
CHI
7
0.19%
MPO
6
0.16%
DET2
6
0.16%
MVK
6
0.16%
SMO1/SMO2
5
0.13%
HMGR
5
0.13%
FPPS
5
0.13%
MCT/IspD
5
0.13%
AACT
5
0.13%
MVD
5
0.13%
TYDC_DDC
4
0.11%
6OMT_4OMT_SOMT
4
0.11%
CCoAOMT
4
0.11%
DXS
4
0.11%
XMT_MXMT_DXMT
3
0.08%
DWF1
3
0.08%
SQE
3
0.08%
MDS/IspF
3
0.08%
ADC
2
0.05%
HPPR
2
0.05%
CPI1
2
0.05%
FK
2
0.05%
GPPS
2
0.05%
PMK
2
0.05%
HMGS
2
0.05%
DXR
2
0.05%
HDS/IspG
2
0.05%
HDR/IspH
2
0.05%
DWF5
1
0.03%
DWF7
1
0.03%
HYD1
1
0.03%
CMK/IspE
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 390 | 19 | UGT (148) | View species results |
| Alkaloid pathway | 321 | 19 | 7DLGT (70) | View species results |
| Phenylpropanoid pathway | 264 | 11 | POD (96) | View species results |
| Flavonoid pathway | 229 | 13 | UFGT (143) | View species results |
| Rosmarinic acid pathway | 99 | 7 | C4H (46) | View species results |
| Steroid pathway | 79 | 12 | CAS (36) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1394 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 221 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cfasscaffold17656_cov1950069410 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold1778_cov1990070440 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold18410_cov2020074510 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold1877_cov2140076390 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold1916_cov2130079570 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold1941_cov2020080670 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold1941_cov2020080680 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold1941_cov2020080690 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold1941_cov2020080700 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold1942_cov2170080950 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2000_cov2030084000 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold203_cov1940087580 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold203_cov1940087780 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold2086_cov2240089400 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2163_cov1730094280 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold220_cov2170096690 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold2244_cov1940099040 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold23221_cov2050103230 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2322_cov1970103450 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2421_cov2250107490 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold2533_cov1680112270 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2548_cov2210112440 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold25551_cov2160112850 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2568_cov1910113470 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2653_cov2130119300 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2678_cov2080120610 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2678_cov2080120620 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2787_cov2080123950 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2810_cov2140124600 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold2813_cov1970124690 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2813_cov1970124700 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2813_cov1970124740 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2814_cov2030124830 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold28196_cov1810124880 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2836_cov1860125340 | Rosmarinic Acid | C4H | medium | pass |
| Cfasscaffold2941_cov2090129180 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold2986_cov2120130660 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3130_cov1720135550 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3142_cov2030136170 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3142_cov2030136180 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold322_cov2110139350 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3230_cov2130139490 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3264_cov2140141180 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold330_cov1990142330 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold337_cov2120143920 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3392_cov2000144480 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3482_cov2070148290 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3816_cov2100157960 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3817_cov2100158040 | Rosmarinic Acid | C4H | low | borderline |
| Cfasscaffold3817_cov2100158050 | Rosmarinic Acid | C4H | low | borderline |