PlantSME Plant secondary metabolism enzyme database

Chamaecrista fasciculata (chamaecrista_fasciculata)

Imported from atlas release summary for Chamaecrista fasciculata.

1382
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.22% Alkaloid pathway 23.23% Phenylpropanoid pathway 19.1% Flavonoid pathway 16.57% Rosmarinic acid pathway 7.16% Steroid pathway 5.72%
Family Distribution
C4H 6.22% C3'H/CYP98A 5.47% UGT 4.9% BAHD 4.77% 7DLGT 4.55% UFGT 4.36% IFS 3.66% CYP76 3.63%
Other Families 62.44%
More Families (95)
T3O 107 2.88% 4CL 105 2.83% F3H 104 2.8% POD 102 2.75% DWF4/CYP90B1 74 1.99% F3'H/CYP75B 70 1.88% BR6OX2/CYP85A2 70 1.88% NMT 67 1.8% PYKS 66 1.78% STR 64 1.72% H6H 63 1.7% CYP71 63 1.7% CAD 56 1.51% CODM/T6ODM 55 1.48% COMT 52 1.4% TRI/TRII 50 1.35% LAC 50 1.35% SMT1/SMT2/SMT3 49 1.32% CAS 49 1.32% CSE 44 1.18% T16H 36 0.97% CHS 36 0.97% CYP90D1 36 0.97% 16OMT 34 0.92% G8O/G8H 32 0.86% F5H/CYP84A 32 0.86% TPS 32 0.86% GS 31 0.83% GES 30 0.81% SGD 30 0.81% F3'5'H/CYP75A 28 0.75% IFR 27 0.73% LAMT 26 0.7% IO 25 0.67% RAS 24 0.65% 7DLH 23 0.62% FNS 23 0.62% TAT 21 0.57% HCT 20 0.54% PMT 19 0.51% ANS/LDOX 19 0.51% BR6OX1/CYP85A1 19 0.51% PAL 18 0.48% CCR 18 0.48% NCS 17 0.46% SLS 17 0.46% CYP51G1 17 0.46% ANR 16 0.43% 8HGO 14 0.38% CPD/CYP90A1 14 0.38% DFR 13 0.35% BBE 12 0.32% ISY 11 0.3% CNMT 10 0.27% COR 10 0.27% ROT3/CYP90C1 10 0.27% GGPPS 10 0.27% CYP719 9 0.24% CPR 9 0.24% SQS/FDFT1 9 0.24% TDC 7 0.19% CYP80B1 7 0.19% CHI 7 0.19% MPO 6 0.16% DET2 6 0.16% MVK 6 0.16% SMO1/SMO2 5 0.13% HMGR 5 0.13% FPPS 5 0.13% MCT/IspD 5 0.13% AACT 5 0.13% MVD 5 0.13% TYDC_DDC 4 0.11% 6OMT_4OMT_SOMT 4 0.11% CCoAOMT 4 0.11% DXS 4 0.11% XMT_MXMT_DXMT 3 0.08% DWF1 3 0.08% SQE 3 0.08% MDS/IspF 3 0.08% ADC 2 0.05% HPPR 2 0.05% CPI1 2 0.05% FK 2 0.05% GPPS 2 0.05% PMK 2 0.05% HMGS 2 0.05% DXR 2 0.05% HDS/IspG 2 0.05% HDR/IspH 2 0.05% DWF5 1 0.03% DWF7 1 0.03% HYD1 1 0.03% CMK/IspE 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 390 19 UGT (148) View species results
Alkaloid pathway 321 19 7DLGT (70) View species results
Phenylpropanoid pathway 264 11 POD (96) View species results
Flavonoid pathway 229 13 UFGT (143) View species results
Rosmarinic acid pathway 99 7 C4H (46) View species results
Steroid pathway 79 12 CAS (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1394 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 221 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Cfasscaffold119_cov2250024330 Alkaloid IO medium borderline
Cfasscaffold123_cov2140027520 Alkaloid IO medium borderline
Cfasscaffold17377_cov2150068210 Alkaloid IO medium borderline
Cfasscaffold1902_cov2300078040 Alkaloid IO low borderline
Cfasscaffold1941_cov2020080690 Alkaloid IO medium borderline
Cfasscaffold23221_cov2050103230 Alkaloid IO medium borderline
Cfasscaffold2421_cov2250107490 Alkaloid IO medium borderline
Cfasscaffold2813_cov1970124700 Alkaloid IO medium borderline
Cfasscaffold2814_cov2030124830 Alkaloid IO medium borderline
Cfasscaffold2836_cov1860125340 Alkaloid IO medium borderline
Cfasscaffold2911_cov2050128250 Alkaloid IO low borderline
Cfasscaffold3230_cov2130139490 Alkaloid IO medium borderline
Cfasscaffold337_cov2120143920 Alkaloid IO medium borderline
Cfasscaffold425_cov2010171170 Alkaloid IO medium pass
Cfasscaffold5364_cov2230198550 Alkaloid IO medium borderline
Cfasscaffold54_cov2040201560 Alkaloid IO medium borderline
Cfasscaffold552_cov2020201970 Alkaloid IO medium borderline
Cfasscaffold5675_cov2340205480 Alkaloid IO medium borderline
Cfasscaffold5675_cov2340205500 Alkaloid IO medium borderline
Cfasscaffold6617_cov2310227060 Alkaloid IO high pass
Cfasscaffold712_cov2030235950 Alkaloid IO low borderline
Cfasscaffold7189_cov1560237620 Alkaloid IO medium borderline
Cfasscaffold8866_cov2180268900 Alkaloid IO low borderline
Cfasscaffold943_cov2020278850 Alkaloid IO medium borderline
Cfasscaffold9850_cov1670326530 Alkaloid IO medium pass