Chamaecrista fasciculata (chamaecrista_fasciculata)
Imported from atlas release summary for Chamaecrista fasciculata.
1382
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1382
Candidate Genes
C4H
6.22%
C3'H/CYP98A
5.47%
UGT
4.9%
BAHD
4.77%
7DLGT
4.55%
UFGT
4.36%
IFS
3.66%
CYP76
3.63%
Other Families
62.44%
More Families (95)
T3O
107
2.88%
4CL
105
2.83%
F3H
104
2.8%
POD
102
2.75%
DWF4/CYP90B1
74
1.99%
F3'H/CYP75B
70
1.88%
BR6OX2/CYP85A2
70
1.88%
NMT
67
1.8%
PYKS
66
1.78%
STR
64
1.72%
H6H
63
1.7%
CYP71
63
1.7%
CAD
56
1.51%
CODM/T6ODM
55
1.48%
COMT
52
1.4%
TRI/TRII
50
1.35%
LAC
50
1.35%
SMT1/SMT2/SMT3
49
1.32%
CAS
49
1.32%
CSE
44
1.18%
T16H
36
0.97%
CHS
36
0.97%
CYP90D1
36
0.97%
16OMT
34
0.92%
G8O/G8H
32
0.86%
F5H/CYP84A
32
0.86%
TPS
32
0.86%
GS
31
0.83%
GES
30
0.81%
SGD
30
0.81%
F3'5'H/CYP75A
28
0.75%
IFR
27
0.73%
LAMT
26
0.7%
IO
25
0.67%
RAS
24
0.65%
7DLH
23
0.62%
FNS
23
0.62%
TAT
21
0.57%
HCT
20
0.54%
PMT
19
0.51%
ANS/LDOX
19
0.51%
BR6OX1/CYP85A1
19
0.51%
PAL
18
0.48%
CCR
18
0.48%
NCS
17
0.46%
SLS
17
0.46%
CYP51G1
17
0.46%
ANR
16
0.43%
8HGO
14
0.38%
CPD/CYP90A1
14
0.38%
DFR
13
0.35%
BBE
12
0.32%
ISY
11
0.3%
CNMT
10
0.27%
COR
10
0.27%
ROT3/CYP90C1
10
0.27%
GGPPS
10
0.27%
CYP719
9
0.24%
CPR
9
0.24%
SQS/FDFT1
9
0.24%
TDC
7
0.19%
CYP80B1
7
0.19%
CHI
7
0.19%
MPO
6
0.16%
DET2
6
0.16%
MVK
6
0.16%
SMO1/SMO2
5
0.13%
HMGR
5
0.13%
FPPS
5
0.13%
MCT/IspD
5
0.13%
AACT
5
0.13%
MVD
5
0.13%
TYDC_DDC
4
0.11%
6OMT_4OMT_SOMT
4
0.11%
CCoAOMT
4
0.11%
DXS
4
0.11%
XMT_MXMT_DXMT
3
0.08%
DWF1
3
0.08%
SQE
3
0.08%
MDS/IspF
3
0.08%
ADC
2
0.05%
HPPR
2
0.05%
CPI1
2
0.05%
FK
2
0.05%
GPPS
2
0.05%
PMK
2
0.05%
HMGS
2
0.05%
DXR
2
0.05%
HDS/IspG
2
0.05%
HDR/IspH
2
0.05%
DWF5
1
0.03%
DWF7
1
0.03%
HYD1
1
0.03%
CMK/IspE
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 390 | 19 | UGT (148) | View species results |
| Alkaloid pathway | 321 | 19 | 7DLGT (70) | View species results |
| Phenylpropanoid pathway | 264 | 11 | POD (96) | View species results |
| Flavonoid pathway | 229 | 13 | UFGT (143) | View species results |
| Rosmarinic acid pathway | 99 | 7 | C4H (46) | View species results |
| Steroid pathway | 79 | 12 | CAS (36) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1394 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 221 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cfasscaffold1706_cov1890065950 | Alkaloid | SGD | low | borderline |
| Cfasscaffold203_cov1940087790 | Alkaloid | SGD | medium | pass |
| Cfasscaffold225_cov2420099760 | Alkaloid | SGD | medium | pass |
| Cfasscaffold2314_cov2100102450 | Alkaloid | SGD | low | borderline |
| Cfasscaffold25551_cov2160112860 | Alkaloid | SGD | medium | pass |
| Cfasscaffold2638_cov2280118450 | Alkaloid | SGD | medium | pass |
| Cfasscaffold2679_cov2000120880 | Alkaloid | SGD | medium | pass |
| Cfasscaffold2851_cov2070126030 | Alkaloid | SGD | medium | pass |
| Cfasscaffold3009_cov2030131770 | Alkaloid | SGD | medium | pass |
| Cfasscaffold30860_cov1720134330 | Alkaloid | SGD | medium | pass |
| Cfasscaffold3889_cov2130160450 | Alkaloid | SGD | medium | pass |
| Cfasscaffold40756_cov2520165670 | Alkaloid | SGD | medium | pass |
| Cfasscaffold4590_cov2020178180 | Alkaloid | SGD | medium | pass |
| Cfasscaffold4590_cov2020178200 | Alkaloid | SGD | low | borderline |
| Cfasscaffold4590_cov2020178220 | Alkaloid | SGD | medium | pass |
| Cfasscaffold5061_cov2150191050 | Alkaloid | SGD | medium | pass |
| Cfasscaffold5068_cov1740191220 | Alkaloid | SGD | medium | pass |
| Cfasscaffold5908_cov2070209890 | Alkaloid | SGD | medium | pass |
| Cfasscaffold637_cov2010222010 | Alkaloid | SGD | low | borderline |
| Cfasscaffold6993_cov2130233460 | Alkaloid | SGD | medium | pass |
| Cfasscaffold7487_cov2000244640 | Alkaloid | SGD | medium | pass |
| Cfasscaffold7637_cov1850248400 | Alkaloid | SGD | medium | pass |
| Cfasscaffold7637_cov1850248410 | Alkaloid | SGD | medium | pass |
| Cfasscaffold7883_cov1850253010 | Alkaloid | SGD | medium | pass |
| Cfasscaffold8454_cov2090262990 | Alkaloid | SGD | low | borderline |
| Cfasscaffold9346_cov2190275560 | Alkaloid | SGD | medium | pass |
| Cfasscaffold9346_cov2190275680 | Alkaloid | SGD | medium | pass |
| Cfasscaffold941_cov1830278440 | Alkaloid | SGD | medium | pass |
| Cfasscaffold95962_cov2330319520 | Alkaloid | SGD | medium | pass |
| Cfasscaffold9654_cov1790323470 | Alkaloid | SGD | medium | pass |