Chamaecrista fasciculata (chamaecrista_fasciculata)
Imported from atlas release summary for Chamaecrista fasciculata.
1382
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1382
Candidate Genes
C4H
6.22%
C3'H/CYP98A
5.47%
UGT
4.9%
BAHD
4.77%
7DLGT
4.55%
UFGT
4.36%
IFS
3.66%
CYP76
3.63%
Other Families
62.44%
More Families (95)
T3O
107
2.88%
4CL
105
2.83%
F3H
104
2.8%
POD
102
2.75%
DWF4/CYP90B1
74
1.99%
F3'H/CYP75B
70
1.88%
BR6OX2/CYP85A2
70
1.88%
NMT
67
1.8%
PYKS
66
1.78%
STR
64
1.72%
H6H
63
1.7%
CYP71
63
1.7%
CAD
56
1.51%
CODM/T6ODM
55
1.48%
COMT
52
1.4%
TRI/TRII
50
1.35%
LAC
50
1.35%
SMT1/SMT2/SMT3
49
1.32%
CAS
49
1.32%
CSE
44
1.18%
T16H
36
0.97%
CHS
36
0.97%
CYP90D1
36
0.97%
16OMT
34
0.92%
G8O/G8H
32
0.86%
F5H/CYP84A
32
0.86%
TPS
32
0.86%
GS
31
0.83%
GES
30
0.81%
SGD
30
0.81%
F3'5'H/CYP75A
28
0.75%
IFR
27
0.73%
LAMT
26
0.7%
IO
25
0.67%
RAS
24
0.65%
7DLH
23
0.62%
FNS
23
0.62%
TAT
21
0.57%
HCT
20
0.54%
PMT
19
0.51%
ANS/LDOX
19
0.51%
BR6OX1/CYP85A1
19
0.51%
PAL
18
0.48%
CCR
18
0.48%
NCS
17
0.46%
SLS
17
0.46%
CYP51G1
17
0.46%
ANR
16
0.43%
8HGO
14
0.38%
CPD/CYP90A1
14
0.38%
DFR
13
0.35%
BBE
12
0.32%
ISY
11
0.3%
CNMT
10
0.27%
COR
10
0.27%
ROT3/CYP90C1
10
0.27%
GGPPS
10
0.27%
CYP719
9
0.24%
CPR
9
0.24%
SQS/FDFT1
9
0.24%
TDC
7
0.19%
CYP80B1
7
0.19%
CHI
7
0.19%
MPO
6
0.16%
DET2
6
0.16%
MVK
6
0.16%
SMO1/SMO2
5
0.13%
HMGR
5
0.13%
FPPS
5
0.13%
MCT/IspD
5
0.13%
AACT
5
0.13%
MVD
5
0.13%
TYDC_DDC
4
0.11%
6OMT_4OMT_SOMT
4
0.11%
CCoAOMT
4
0.11%
DXS
4
0.11%
XMT_MXMT_DXMT
3
0.08%
DWF1
3
0.08%
SQE
3
0.08%
MDS/IspF
3
0.08%
ADC
2
0.05%
HPPR
2
0.05%
CPI1
2
0.05%
FK
2
0.05%
GPPS
2
0.05%
PMK
2
0.05%
HMGS
2
0.05%
DXR
2
0.05%
HDS/IspG
2
0.05%
HDR/IspH
2
0.05%
DWF5
1
0.03%
DWF7
1
0.03%
HYD1
1
0.03%
CMK/IspE
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 390 | 19 | UGT (148) | View species results |
| Alkaloid pathway | 321 | 19 | 7DLGT (70) | View species results |
| Phenylpropanoid pathway | 264 | 11 | POD (96) | View species results |
| Flavonoid pathway | 229 | 13 | UFGT (143) | View species results |
| Rosmarinic acid pathway | 99 | 7 | C4H (46) | View species results |
| Steroid pathway | 79 | 12 | CAS (36) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1394 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 221 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cfasscaffold5148_cov2330193650 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold5350_cov2360198280 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold563_cov2130204290 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold5860_cov2340208780 | Alkaloid | 7DLGT | high | pass |
| Cfasscaffold5860_cov2340208790 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold5900_cov2190209700 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold5917_cov2250210300 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold5972_cov2060211770 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold6197_cov2100217430 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold6255_cov2290219220 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold6255_cov2290219240 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold6262_cov2610219470 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold6295_cov2080219790 | Alkaloid | 7DLGT | high | pass |
| Cfasscaffold6295_cov2080219800 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold6295_cov2080219810 | Alkaloid | 7DLGT | high | pass |
| Cfasscaffold6295_cov2080219830 | Alkaloid | 7DLGT | high | pass |
| Cfasscaffold6295_cov2080219840 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold6330_cov2330220910 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold6330_cov2330220970 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold6406_cov2350222920 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold6473_cov1840224010 | Alkaloid | 7DLGT | high | pass |
| Cfasscaffold6507_cov2150225060 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold6703_cov2530228400 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold6705_cov2360228560 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold69_cov2010233570 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold7040_cov2210234250 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold7198_cov2180237770 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold7198_cov2180237780 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold7198_cov2180237800 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold7338_cov1860241300 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold7367_cov2200241760 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold7367_cov2200241780 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold7871_cov2080252920 | Alkaloid | 7DLGT | high | pass |
| Cfasscaffold7944_cov1850253740 | Alkaloid | 7DLGT | high | pass |
| Cfasscaffold8065_cov1570255930 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold8189_cov1690257530 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold8281_cov2200260000 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold83_cov2310262070 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold83_cov2310262080 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold8491_cov2070263570 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold8547_cov1910264300 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold8720_cov2240266790 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold8720_cov2240266820 | Alkaloid | 7DLGT | medium | pass |
| Cfasscaffold93680_cov1870276160 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold945_cov2030279600 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold945_cov2030279620 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold95238_cov2270292150 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold95397_cov2080299980 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold95461_cov1930303730 | Alkaloid | 7DLGT | low | borderline |
| Cfasscaffold95562_cov2060308580 | Alkaloid | 7DLGT | medium | pass |