PlantSME Plant secondary metabolism enzyme database

Chenopodium giganteum (chenopodium_giganteum)

Imported from atlas release summary for Chenopodium giganteum.

2146
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.93% Phenylpropanoid pathway 24.04% Alkaloid pathway 22.69% Flavonoid pathway 10.62% Steroid pathway 8.01% Rosmarinic acid pathway 7.69%
Family Distribution
BAHD 6.14% C4H 5.9% POD 5.62% C3'H/CYP98A 5.5% 4CL 4.37% NMT 3.09% IFS 3.09% T3O 2.97%
Other Families 63.31%
More Families (95)
CYP76 142 2.83% UGT 135 2.69% UFGT 134 2.67% 7DLGT 130 2.59% F3'H/CYP75B 114 2.27% F3H 114 2.27% CAD 103 2.05% SMT1/SMT2/SMT3 103 2.05% DWF4/CYP90B1 94 1.87% CYP71 94 1.87% CAS 91 1.81% BR6OX2/CYP85A2 90 1.79% STR 88 1.75% CODM/T6ODM 76 1.52% TPS 75 1.5% GES 69 1.38% SGD 67 1.34% LAC 66 1.32% H6H 59 1.18% CSE 59 1.18% IFR 57 1.14% TRI/TRII 56 1.12% SLS 56 1.12% COMT 52 1.04% GS 50 1.0% PYKS 45 0.9% CYP90D1 44 0.88% G8O/G8H 37 0.74% T16H 35 0.7% RAS 32 0.64% 16OMT 31 0.62% HCT 31 0.62% F3'5'H/CYP75A 29 0.58% F5H/CYP84A 29 0.58% 7DLH 27 0.54% 8HGO 27 0.54% ANR 27 0.54% CYP51G1 26 0.52% CHS 24 0.48% PMT 23 0.46% COR 22 0.44% DFR 22 0.44% CCR 22 0.44% BR6OX1/CYP85A1 21 0.42% FPPS 21 0.42% CPR 20 0.4% CPD/CYP90A1 20 0.4% IO 19 0.38% FNS 19 0.38% HPPR 19 0.38% AACT 19 0.38% TAT 18 0.36% CNMT 15 0.3% MPO 15 0.3% PAL 15 0.3% ANS/LDOX 14 0.28% BBE 13 0.26% CCoAOMT 13 0.26% ROT3/CYP90C1 13 0.26% SQS/FDFT1 12 0.24% GGPPS 10 0.2% XMT_MXMT_DXMT 9 0.18% DXS 9 0.18% CYP719 8 0.16% LAMT 8 0.16% CHI 8 0.16% SMO1/SMO2 8 0.16% 6OMT_4OMT_SOMT 7 0.14% TDC 7 0.14% NCS 7 0.14% SQE 7 0.14% MVK 7 0.14% MVD 6 0.12% GPPS 6 0.12% CYP80B1 5 0.1% ISY 5 0.1% DET2 5 0.1% PMK 5 0.1% TYDC_DDC 4 0.08% HYD1 4 0.08% DWF7 4 0.08% DWF1 4 0.08% CPI1 4 0.08% MDS/IspF 4 0.08% FK 3 0.06% DWF5 3 0.06% CMK/IspE 3 0.06% DXR 3 0.06% HMGS 3 0.06% MCT/IspD 3 0.06% IDI 3 0.06% HMGR 3 0.06% HDR/IspH 3 0.06% HDS/IspG 3 0.06% FLS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 578 19 BAHD (242) View species results
Phenylpropanoid pathway 516 11 POD (248) View species results
Alkaloid pathway 487 18 7DLGT (74) View species results
Flavonoid pathway 228 10 UFGT (129) View species results
Steroid pathway 172 13 CAS (69) View species results
Rosmarinic acid pathway 165 7 C4H (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1779 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Cf000064.mRNA1 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Cf000208.mRNA1 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Cf000209.mRNA1 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Cf001129.mRNA1 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Cf002502.mRNA1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Cf003647.mRNA1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Cf004004.mRNA1 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Cf004184.mRNA1 Alkaloid NMT medium borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
Cf004689.mRNA1 Alkaloid NMT low borderline NMT__00033__sp_Q5QD03_SUVH3_CHLRE
Cf005037.mRNA1 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Cf005152.mRNA1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Cf005440.mRNA1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Cf006270.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Cf006521.mRNA1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Cf006522.mRNA1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Cf006529.mRNA1 Alkaloid NMT medium pass NMT__00034__sp_Q5VN06_CLF_ORYSJ
Cf006734.mRNA1 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Cf007807.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Cf007808.mRNA1 Alkaloid NMT medium borderline NMT__00018__sp_I1M2U5_NAMT1_SOYBN
Cf008060.mRNA1 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Cf008748.mRNA1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Cf010392.mRNA1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Cf010688.mRNA1 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cf011074.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Cf011079.mRNA1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Cf011383.mRNA1 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Cf015368.mRNA1 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Cf015459.mRNA1 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Cf015605.mRNA1 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Cf015746.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Cf015785.mRNA1 Alkaloid NMT medium borderline NMT__00029__sp_Q42963_PMT1_TOBAC
Cf015970.mRNA1 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Cf017128.mRNA1 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Cf017605.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cf017625.mRNA1 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Cf017883.mRNA1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Cf020507.mRNA1 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cf020618.mRNA1 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Cf022577.mRNA1 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
Cf022610.mRNA1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Cf022876.mRNA1 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
Cf024043.mRNA1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Cf024219.mRNA1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Cf024713.mRNA1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Cf025421.mRNA1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Cf025547.mRNA1 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Cf026979.mRNA1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Cf027548.mRNA1 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Cf027831.mRNA1 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Cf028296.mRNA1 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH