PlantSME Plant secondary metabolism enzyme database

Chenopodium giganteum (chenopodium_giganteum)

Imported from atlas release summary for Chenopodium giganteum.

2146
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.93% Phenylpropanoid pathway 24.04% Alkaloid pathway 22.69% Flavonoid pathway 10.62% Steroid pathway 8.01% Rosmarinic acid pathway 7.69%
Family Distribution
BAHD 6.14% C4H 5.9% POD 5.62% C3'H/CYP98A 5.5% 4CL 4.37% NMT 3.09% IFS 3.09% T3O 2.97%
Other Families 63.31%
More Families (95)
CYP76 142 2.83% UGT 135 2.69% UFGT 134 2.67% 7DLGT 130 2.59% F3'H/CYP75B 114 2.27% F3H 114 2.27% CAD 103 2.05% SMT1/SMT2/SMT3 103 2.05% DWF4/CYP90B1 94 1.87% CYP71 94 1.87% CAS 91 1.81% BR6OX2/CYP85A2 90 1.79% STR 88 1.75% CODM/T6ODM 76 1.52% TPS 75 1.5% GES 69 1.38% SGD 67 1.34% LAC 66 1.32% H6H 59 1.18% CSE 59 1.18% IFR 57 1.14% TRI/TRII 56 1.12% SLS 56 1.12% COMT 52 1.04% GS 50 1.0% PYKS 45 0.9% CYP90D1 44 0.88% G8O/G8H 37 0.74% T16H 35 0.7% RAS 32 0.64% 16OMT 31 0.62% HCT 31 0.62% F3'5'H/CYP75A 29 0.58% F5H/CYP84A 29 0.58% 7DLH 27 0.54% 8HGO 27 0.54% ANR 27 0.54% CYP51G1 26 0.52% CHS 24 0.48% PMT 23 0.46% COR 22 0.44% DFR 22 0.44% CCR 22 0.44% BR6OX1/CYP85A1 21 0.42% FPPS 21 0.42% CPR 20 0.4% CPD/CYP90A1 20 0.4% IO 19 0.38% FNS 19 0.38% HPPR 19 0.38% AACT 19 0.38% TAT 18 0.36% CNMT 15 0.3% MPO 15 0.3% PAL 15 0.3% ANS/LDOX 14 0.28% BBE 13 0.26% CCoAOMT 13 0.26% ROT3/CYP90C1 13 0.26% SQS/FDFT1 12 0.24% GGPPS 10 0.2% XMT_MXMT_DXMT 9 0.18% DXS 9 0.18% CYP719 8 0.16% LAMT 8 0.16% CHI 8 0.16% SMO1/SMO2 8 0.16% 6OMT_4OMT_SOMT 7 0.14% TDC 7 0.14% NCS 7 0.14% SQE 7 0.14% MVK 7 0.14% MVD 6 0.12% GPPS 6 0.12% CYP80B1 5 0.1% ISY 5 0.1% DET2 5 0.1% PMK 5 0.1% TYDC_DDC 4 0.08% HYD1 4 0.08% DWF7 4 0.08% DWF1 4 0.08% CPI1 4 0.08% MDS/IspF 4 0.08% FK 3 0.06% DWF5 3 0.06% CMK/IspE 3 0.06% DXR 3 0.06% HMGS 3 0.06% MCT/IspD 3 0.06% IDI 3 0.06% HMGR 3 0.06% HDR/IspH 3 0.06% HDS/IspG 3 0.06% FLS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 578 19 BAHD (242) View species results
Phenylpropanoid pathway 516 11 POD (248) View species results
Alkaloid pathway 487 18 7DLGT (74) View species results
Flavonoid pathway 228 10 UFGT (129) View species results
Steroid pathway 172 13 CAS (69) View species results
Rosmarinic acid pathway 165 7 C4H (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1779 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Cf000644.mRNA1 Alkaloid PMT medium borderline
Cf012121.mRNA1 Alkaloid PMT low borderline
Cf012296.mRNA1 Alkaloid PMT low borderline
Cf017137.mRNA1 Alkaloid PMT low borderline
Cf024349.mRNA1 Alkaloid PMT medium pass
Cf026005.mRNA1 Alkaloid PMT medium pass
Cf027871.mRNA1 Alkaloid PMT medium pass
Cf029387.mRNA1 Alkaloid PMT low borderline
Cf040184.mRNA1 Alkaloid PMT low borderline
Cf041557.mRNA1 Alkaloid PMT medium borderline
Cf047189.mRNA1 Alkaloid PMT medium pass
Cf048885.mRNA1 Alkaloid PMT medium pass
Cf048886.mRNA1 Alkaloid PMT medium pass
Cf050920.mRNA1 Alkaloid PMT medium pass
Cf052941.mRNA1 Alkaloid PMT low borderline
Cf056047.mRNA1 Alkaloid PMT medium pass
Cf062513.mRNA1 Alkaloid PMT medium pass
Cf062842.mRNA1 Alkaloid PMT low borderline
Cf062871.mRNA1 Alkaloid PMT medium borderline
Cf067425.mRNA1 Alkaloid PMT medium pass
Cf074997.mRNA1 Alkaloid PMT low borderline
Cf077133.mRNA1 Alkaloid PMT medium pass
Cf078666.mRNA1 Alkaloid PMT medium pass