PlantSME Plant secondary metabolism enzyme database

Chlorokybus atmophyticus (chlorokybus_atmophyticus)

Imported from atlas release summary for Chlorokybus atmophyticus.

144
Candidate Genes
91
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.17% Alkaloid pathway 25.69% Phenylpropanoid pathway 22.22% Steroid pathway 13.89% Rosmarinic acid pathway 5.56% Flavonoid pathway 3.47%
Family Distribution
NMT 6.28% IFR 6.28% 4CL 6.28% BAHD 5.58% C4H 4.42% C3'H/CYP98A 4.42% GS 4.19% POD 3.95%
Other Families 58.6%
More Families (83)
TRI/TRII 14 3.26% CYP76 12 2.79% CNMT 11 2.56% CAD 11 2.56% DWF4/CYP90B1 11 2.56% STR 8 1.86% CYP71 8 1.86% F3'H/CYP75B 7 1.63% IFS 7 1.63% CSE 7 1.63% SMT1/SMT2/SMT3 7 1.63% 7DLH 6 1.4% FNS 5 1.16% CPR 5 1.16% CAS 5 1.16% BR6OX2/CYP85A2 5 1.16% CPD/CYP90A1 5 1.16% SLS 4 0.93% COR 4 0.93% T16H 4 0.93% PYKS 4 0.93% LAC 4 0.93% SQS/FDFT1 4 0.93% CODM/T6ODM 3 0.7% T3O 3 0.7% DFR 3 0.7% CCoAOMT 3 0.7% CCR 3 0.7% DET2 3 0.7% SMO1/SMO2 3 0.7% GGPPS 3 0.7% FPPS 3 0.7% AACT 3 0.7% ODC 2 0.47% IO 2 0.47% ADC 2 0.47% BBE 2 0.47% G8O/G8H 2 0.47% CYP80B1 2 0.47% F3'5'H/CYP75A 2 0.47% HPPR 2 0.47% SQE 2 0.47% DWF1 2 0.47% MVK 2 0.47% HMGR 2 0.47% MVD 2 0.47% DXS 2 0.47% CYP719 1 0.23% PMT 1 0.23% TYDC_DDC 1 0.23% 8HGO 1 0.23% MPO 1 0.23% XMT_MXMT_DXMT 1 0.23% GES 1 0.23% ISY 1 0.23% TDC 1 0.23% 7DLGT 1 0.23% 6OMT_4OMT_SOMT 1 0.23% ANS/LDOX 1 0.23% UFGT 1 0.23% ANR 1 0.23% F3H 1 0.23% CHI 1 0.23% COMT 1 0.23% F5H/CYP84A 1 0.23% TAT 1 0.23% DWF7 1 0.23% CYP51G1 1 0.23% ROT3/CYP90C1 1 0.23% CPI1 1 0.23% CYP90D1 1 0.23% FK 1 0.23% HYD1 1 0.23% PMK 1 0.23% CMK/IspE 1 0.23% MCT/IspD 1 0.23% HMGS 1 0.23% HDR/IspH 1 0.23% MDS/IspF 1 0.23% UGT 1 0.23% DXR 1 0.23% HDS/IspG 1 0.23% IDI 1 0.23%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 42 18 BAHD (18) View species results
Alkaloid pathway 37 9 GS (10) View species results
Phenylpropanoid pathway 32 7 POD (13) View species results
Steroid pathway 20 10 CAS (5) View species results
Rosmarinic acid pathway 8 4 CPR (4) View species results
Flavonoid pathway 5 3 4CL (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 22 123 7DLH, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 1 24 BAHD
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
Catmscaffold104_pilon0003300 Terpenoid CYP76 low borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Catmscaffold180_pilon0024160 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
Catmscaffold180_pilon0024180 Terpenoid CYP76 low borderline CYP76__00016__sp_P0DXJ6_C7631_LOPWI
Catmscaffold23_pilon0034480 Terpenoid CYP76 low borderline CYP76__00016__sp_P0DXJ6_C7631_LOPWI
Catmscaffold23_pilon0034980 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
Catmscaffold31_pilon0047250 Terpenoid CYP76 medium pass CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
Catmscaffold32_pilon0049000 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Catmscaffold33_pilon0049740 Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
Catmscaffold33_pilon0051380 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
Catmscaffold369_pilon0054530 Terpenoid CYP76 low borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Catmscaffold4_pilon0064420 Terpenoid CYP76 low borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Catmscaffold56_pilon0070170 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI