PlantSME Plant secondary metabolism enzyme database

Chlorokybus atmophyticus (chlorokybus_atmophyticus)

Imported from atlas release summary for Chlorokybus atmophyticus.

144
Candidate Genes
91
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.17% Alkaloid pathway 25.69% Phenylpropanoid pathway 22.22% Steroid pathway 13.89% Rosmarinic acid pathway 5.56% Flavonoid pathway 3.47%
Family Distribution
NMT 6.28% IFR 6.28% 4CL 6.28% BAHD 5.58% C4H 4.42% C3'H/CYP98A 4.42% GS 4.19% POD 3.95%
Other Families 58.6%
More Families (83)
TRI/TRII 14 3.26% CYP76 12 2.79% CNMT 11 2.56% CAD 11 2.56% DWF4/CYP90B1 11 2.56% STR 8 1.86% CYP71 8 1.86% F3'H/CYP75B 7 1.63% IFS 7 1.63% CSE 7 1.63% SMT1/SMT2/SMT3 7 1.63% 7DLH 6 1.4% FNS 5 1.16% CPR 5 1.16% CAS 5 1.16% BR6OX2/CYP85A2 5 1.16% CPD/CYP90A1 5 1.16% SLS 4 0.93% COR 4 0.93% T16H 4 0.93% PYKS 4 0.93% LAC 4 0.93% SQS/FDFT1 4 0.93% CODM/T6ODM 3 0.7% T3O 3 0.7% DFR 3 0.7% CCoAOMT 3 0.7% CCR 3 0.7% DET2 3 0.7% SMO1/SMO2 3 0.7% GGPPS 3 0.7% FPPS 3 0.7% AACT 3 0.7% ODC 2 0.47% IO 2 0.47% ADC 2 0.47% BBE 2 0.47% G8O/G8H 2 0.47% CYP80B1 2 0.47% F3'5'H/CYP75A 2 0.47% HPPR 2 0.47% SQE 2 0.47% DWF1 2 0.47% MVK 2 0.47% HMGR 2 0.47% MVD 2 0.47% DXS 2 0.47% CYP719 1 0.23% PMT 1 0.23% TYDC_DDC 1 0.23% 8HGO 1 0.23% MPO 1 0.23% XMT_MXMT_DXMT 1 0.23% GES 1 0.23% ISY 1 0.23% TDC 1 0.23% 7DLGT 1 0.23% 6OMT_4OMT_SOMT 1 0.23% ANS/LDOX 1 0.23% UFGT 1 0.23% ANR 1 0.23% F3H 1 0.23% CHI 1 0.23% COMT 1 0.23% F5H/CYP84A 1 0.23% TAT 1 0.23% DWF7 1 0.23% CYP51G1 1 0.23% ROT3/CYP90C1 1 0.23% CPI1 1 0.23% CYP90D1 1 0.23% FK 1 0.23% HYD1 1 0.23% PMK 1 0.23% CMK/IspE 1 0.23% MCT/IspD 1 0.23% HMGS 1 0.23% HDR/IspH 1 0.23% MDS/IspF 1 0.23% UGT 1 0.23% DXR 1 0.23% HDS/IspG 1 0.23% IDI 1 0.23%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 42 18 BAHD (18) View species results
Alkaloid pathway 37 9 GS (10) View species results
Phenylpropanoid pathway 32 7 POD (13) View species results
Steroid pathway 20 10 CAS (5) View species results
Rosmarinic acid pathway 8 4 CPR (4) View species results
Flavonoid pathway 5 3 4CL (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 22 123 7DLH, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 1 24 BAHD
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Catmscaffold10_pilon0007110 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Catmscaffold138_pilon0015120 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Catmscaffold195_pilon0025830 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Catmscaffold234_pilon0032490 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Catmscaffold26_pilon0037930 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Catmscaffold31_pilon0047070 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Catmscaffold58_pilon0072320 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Catmscaffold64_pilon0075560 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR