Chlorokybus atmophyticus (chlorokybus_atmophyticus)
Imported from atlas release summary for Chlorokybus atmophyticus.
144
Candidate Genes
91
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
144
Candidate Genes
NMT
6.28%
IFR
6.28%
4CL
6.28%
BAHD
5.58%
C4H
4.42%
C3'H/CYP98A
4.42%
GS
4.19%
POD
3.95%
Other Families
58.6%
More Families (83)
TRI/TRII
14
3.26%
CYP76
12
2.79%
CNMT
11
2.56%
CAD
11
2.56%
DWF4/CYP90B1
11
2.56%
STR
8
1.86%
CYP71
8
1.86%
F3'H/CYP75B
7
1.63%
IFS
7
1.63%
CSE
7
1.63%
SMT1/SMT2/SMT3
7
1.63%
7DLH
6
1.4%
FNS
5
1.16%
CPR
5
1.16%
CAS
5
1.16%
BR6OX2/CYP85A2
5
1.16%
CPD/CYP90A1
5
1.16%
SLS
4
0.93%
COR
4
0.93%
T16H
4
0.93%
PYKS
4
0.93%
LAC
4
0.93%
SQS/FDFT1
4
0.93%
CODM/T6ODM
3
0.7%
T3O
3
0.7%
DFR
3
0.7%
CCoAOMT
3
0.7%
CCR
3
0.7%
DET2
3
0.7%
SMO1/SMO2
3
0.7%
GGPPS
3
0.7%
FPPS
3
0.7%
AACT
3
0.7%
ODC
2
0.47%
IO
2
0.47%
ADC
2
0.47%
BBE
2
0.47%
G8O/G8H
2
0.47%
CYP80B1
2
0.47%
F3'5'H/CYP75A
2
0.47%
HPPR
2
0.47%
SQE
2
0.47%
DWF1
2
0.47%
MVK
2
0.47%
HMGR
2
0.47%
MVD
2
0.47%
DXS
2
0.47%
CYP719
1
0.23%
PMT
1
0.23%
TYDC_DDC
1
0.23%
8HGO
1
0.23%
MPO
1
0.23%
XMT_MXMT_DXMT
1
0.23%
GES
1
0.23%
ISY
1
0.23%
TDC
1
0.23%
7DLGT
1
0.23%
6OMT_4OMT_SOMT
1
0.23%
ANS/LDOX
1
0.23%
UFGT
1
0.23%
ANR
1
0.23%
F3H
1
0.23%
CHI
1
0.23%
COMT
1
0.23%
F5H/CYP84A
1
0.23%
TAT
1
0.23%
DWF7
1
0.23%
CYP51G1
1
0.23%
ROT3/CYP90C1
1
0.23%
CPI1
1
0.23%
CYP90D1
1
0.23%
FK
1
0.23%
HYD1
1
0.23%
PMK
1
0.23%
CMK/IspE
1
0.23%
MCT/IspD
1
0.23%
HMGS
1
0.23%
HDR/IspH
1
0.23%
MDS/IspF
1
0.23%
UGT
1
0.23%
DXR
1
0.23%
HDS/IspG
1
0.23%
IDI
1
0.23%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 42 | 18 | BAHD (18) | View species results |
| Alkaloid pathway | 37 | 9 | GS (10) | View species results |
| Phenylpropanoid pathway | 32 | 7 | POD (13) | View species results |
| Steroid pathway | 20 | 10 | CAS (5) | View species results |
| Rosmarinic acid pathway | 8 | 4 | CPR (4) | View species results |
| Flavonoid pathway | 5 | 3 | 4CL (2) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 22 | 123 | 7DLH, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 1 | 24 | BAHD |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Catmscaffold26_pilon0038800 | Alkaloid | GS | low | borderline |
| Catmscaffold29_pilon0042340 | Alkaloid | GS | medium | pass |
| Catmscaffold66_pilon0076780 | Alkaloid | GS | low | borderline |
| Catmscaffold76_pilon0081490 | Alkaloid | GS | medium | pass |
| Catmscaffold94_pilon0089720 | Alkaloid | GS | medium | pass |
| Catmscaffold180_pilon0024180 | Alkaloid | IO | medium | borderline |
| Catmscaffold33_pilon0049740 | Alkaloid | IO | medium | borderline |
| Catmscaffold64_pilon0075310 | Alkaloid | ISY | medium | pass |
| Catmscaffold21_pilon0030170 | Alkaloid | MPO | medium | pass |
| Catmscaffold119_pilon0010810 | Alkaloid | NMT | medium | pass |
| Catmscaffold12_pilon0013400 | Alkaloid | NMT | low | borderline |
| Catmscaffold158_pilon0017070 | Alkaloid | NMT | low | borderline |
| Catmscaffold178_pilon0019730 | Alkaloid | NMT | medium | pass |
| Catmscaffold180_pilon0024130 | Alkaloid | NMT | medium | borderline |
| Catmscaffold23_pilon0034810 | Alkaloid | NMT | medium | pass |
| Catmscaffold269_pilon0037040 | Alkaloid | NMT | medium | pass |
| Catmscaffold26_pilon0038630 | Alkaloid | NMT | medium | pass |
| Catmscaffold290_pilon0041480 | Alkaloid | NMT | low | borderline |
| Catmscaffold308_pilon0046230 | Alkaloid | NMT | low | borderline |
| Catmscaffold30_pilon0046910 | Alkaloid | NMT | medium | pass |
| Catmscaffold35_pilon0053190 | Alkaloid | NMT | medium | pass |
| Catmscaffold36_pilon0055140 | Alkaloid | NMT | low | borderline |
| Catmscaffold387_pilon0056230 | Alkaloid | NMT | low | borderline |
| Catmscaffold41_pilon0058540 | Alkaloid | NMT | medium | pass |
| Catmscaffold44_pilon0060080 | Alkaloid | NMT | low | borderline |
| Catmscaffold44_pilon0060270 | Alkaloid | NMT | medium | borderline |
| Catmscaffold482_pilon0063340 | Alkaloid | NMT | low | borderline |
| Catmscaffold4_pilon0064930 | Alkaloid | NMT | low | borderline |
| Catmscaffold56_pilon0070180 | Alkaloid | NMT | low | borderline |
| Catmscaffold57_pilon0071700 | Alkaloid | NMT | low | borderline |
| Catmscaffold58_pilon0072420 | Alkaloid | NMT | low | borderline |
| Catmscaffold80_pilon0083870 | Alkaloid | NMT | low | borderline |
| Catmscaffold80_pilon0084140 | Alkaloid | NMT | low | borderline |
| Catmscaffold91_pilon0087820 | Alkaloid | NMT | medium | pass |
| Catmscaffold91_pilon0087860 | Alkaloid | NMT | medium | borderline |
| Catmscaffold97_pilon0091330 | Alkaloid | NMT | medium | borderline |
| Catmscaffold13_pilon0015340 | Alkaloid | ODC | low | borderline |
| Catmscaffold1_pilon0027600 | Alkaloid | ODC | low | borderline |
| Catmscaffold10_pilon0007180 | Alkaloid | PMT | medium | borderline |
| Catmscaffold22_pilon0031880 | Alkaloid | PYKS | low | borderline |
| Catmscaffold35_pilon0053280 | Alkaloid | PYKS | low | borderline |
| Catmscaffold80_pilon0083410 | Alkaloid | PYKS | low | borderline |
| Catmscaffold80_pilon0083420 | Alkaloid | PYKS | low | borderline |
| Catmscaffold108_pilon0006080 | Alkaloid | SLS | medium | borderline |
| Catmscaffold1_pilon0026070 | Alkaloid | SLS | medium | borderline |
| Catmscaffold23_pilon0034480 | Alkaloid | SLS | medium | borderline |
| Catmscaffold35_pilon0053420 | Alkaloid | SLS | low | borderline |
| Catmscaffold10_pilon0007110 | Alkaloid | STR | low | borderline |
| Catmscaffold138_pilon0015120 | Alkaloid | STR | low | borderline |
| Catmscaffold195_pilon0025830 | Alkaloid | STR | low | borderline |