PlantSME Plant secondary metabolism enzyme database

Chorisodontium acidophyllum (chorisodontium_acidophyllum)

Imported from atlas release summary for Chorisodontium acidophyllum.

651
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.19% Terpenoid pathway 23.5% Alkaloid pathway 22.89% Flavonoid pathway 12.9% Rosmarinic acid pathway 9.52% Steroid pathway 5.99%
Family Distribution
C4H 6.15% C3'H/CYP98A 6.1% BAHD 5.53% POD 4.67% 4CL 4.44% CYP76 4.27% NMT 3.59% IFS 3.02%
Other Families 62.22%
More Families (96)
T3O 49 2.79% STR 48 2.74% GS 47 2.68% DWF4/CYP90B1 42 2.39% F3'H/CYP75B 40 2.28% BR6OX2/CYP85A2 40 2.28% PAL 36 2.05% UGT 35 1.99% 7DLGT 34 1.94% F3H 34 1.94% UFGT 33 1.88% PYKS 32 1.82% IFR 29 1.65% CAD 26 1.48% CHS 24 1.37% CODM/T6ODM 23 1.31% SMT1/SMT2/SMT3 22 1.25% COMT 20 1.14% LAC 20 1.14% IO 19 1.08% G8O/G8H 17 0.97% CPR 17 0.97% H6H 16 0.91% F3'5'H/CYP75A 16 0.91% T16H 15 0.85% TRI/TRII 15 0.85% ANR 15 0.85% COR 14 0.8% CYP71 13 0.74% RAS 12 0.68% CYP90D1 12 0.68% 16OMT 11 0.63% SLS 11 0.63% CSE 11 0.63% CAS 11 0.63% LAMT 9 0.51% CNMT 9 0.51% HCT 9 0.51% CPD/CYP90A1 9 0.51% NCS 8 0.46% SQS/FDFT1 8 0.46% 7DLH 7 0.4% SGD 7 0.4% FNS 7 0.4% BR6OX1/CYP85A1 7 0.4% PMT 6 0.34% BBE 6 0.34% CYP719 6 0.34% DFR 6 0.34% F5H/CYP84A 6 0.34% AACT 6 0.34% 8HGO 5 0.28% TDC 5 0.28% 6OMT_4OMT_SOMT 5 0.28% DWF5 5 0.28% ROT3/CYP90C1 5 0.28% DET2 5 0.28% MVK 5 0.28% MDS/IspF 5 0.28% MPO 4 0.23% CCR 4 0.23% TAT 4 0.23% CYP80B1 3 0.17% ADC 3 0.17% ANS/LDOX 3 0.17% CHI 3 0.17% CCoAOMT 3 0.17% SQE 3 0.17% FPPS 3 0.17% GGPPS 3 0.17% ISY 2 0.11% GES 2 0.11% ODC 2 0.11% TYDC_DDC 2 0.11% CYP51G1 2 0.11% SMO1/SMO2 2 0.11% HYD1 2 0.11% HDS/IspG 2 0.11% MCT/IspD 2 0.11% TPS 2 0.11% CMK/IspE 2 0.11% DXR 2 0.11% HDR/IspH 2 0.11% MVD 2 0.11% HMGS 2 0.11% XMT_MXMT_DXMT 1 0.06% FLS 1 0.06% HPPR 1 0.06% CPI1 1 0.06% DWF1 1 0.06% FK 1 0.06% DWF7 1 0.06% DXS 1 0.06% PMK 1 0.06% HMGR 1 0.06% IDI 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 10 POD (74) View species results
Terpenoid pathway 153 21 BAHD (59) View species results
Alkaloid pathway 149 16 NMT (27) View species results
Flavonoid pathway 84 7 UFGT (29) View species results
Rosmarinic acid pathway 62 7 C4H (25) View species results
Steroid pathway 39 12 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 662 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 118 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
Cacid1866150031280 Alkaloid LAMT low borderline
Cacid2434600142330 Alkaloid LAMT medium borderline
Cacid2439520148790 Alkaloid LAMT medium borderline
Cacid2469260186370 Alkaloid LAMT low borderline
Cacid2508030261990 Alkaloid LAMT medium pass
Cacid2517190285180 Alkaloid LAMT medium borderline
Cacid2518050288100 Alkaloid LAMT medium borderline
Cacid2523020299200 Alkaloid LAMT low borderline
Cacid2531300309250 Alkaloid LAMT medium borderline