PlantSME Plant secondary metabolism enzyme database

Chrysanthemum seticuspe (chrysanthemum_seticuspe)

Imported from atlas release summary for Chrysanthemum seticuspe.

3449
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.6% Alkaloid pathway 20.59% Phenylpropanoid pathway 18.15% Flavonoid pathway 12.64% Rosmarinic acid pathway 8.93% Steroid pathway 6.09%
Family Distribution
C4H 7.42% C3'H/CYP98A 6.47% BAHD 5.31% CYP76 4.93% UGT 4.56% 7DLGT 3.98% IFS 3.75% UFGT 3.74%
Other Families 59.84%
More Families (97)
T3O 304 3.33% POD 275 3.01% 4CL 228 2.49% F3'H/CYP75B 225 2.46% BR6OX2/CYP85A2 212 2.32% TPS 208 2.28% GES 187 2.05% DWF4/CYP90B1 179 1.96% CAS 175 1.91% NMT 163 1.78% F3H 162 1.77% CAD 126 1.38% STR 125 1.37% CODM/T6ODM 113 1.24% LAC 107 1.17% CYP71 102 1.12% HCT 101 1.11% CYP90D1 98 1.07% SMT1/SMT2/SMT3 96 1.05% T16H 95 1.04% G8O/G8H 94 1.03% H6H 91 1.0% TAT 89 0.97% IO 86 0.94% TRI/TRII 84 0.92% F3'5'H/CYP75A 79 0.86% CSE 77 0.84% BBE 75 0.82% COMT 70 0.77% F5H/CYP84A 66 0.72% RAS 65 0.71% PYKS 57 0.62% GS 56 0.61% 16OMT 55 0.6% FNS 54 0.59% IFR 51 0.56% 7DLH 50 0.55% PMT 48 0.53% SLS 46 0.5% CPD/CYP90A1 45 0.49% CYP51G1 45 0.49% CYP80B1 39 0.43% NCS 36 0.39% BR6OX1/CYP85A1 36 0.39% 8HGO 34 0.37% SGD 33 0.36% ANS/LDOX 33 0.36% CPR 32 0.35% LAMT 28 0.31% ANR 28 0.31% DFR 28 0.31% CCR 26 0.28% CCoAOMT 25 0.27% FPPS 25 0.27% SQE 24 0.26% PAL 21 0.23% HMGR 20 0.22% CYP80F1 19 0.21% HPPR 18 0.2% ROT3/CYP90C1 18 0.2% AACT 18 0.2% CHS 17 0.19% COR 16 0.18% CYP719 15 0.16% MPO 14 0.15% TYDC_DDC 14 0.15% ISY 13 0.14% SQS/FDFT1 13 0.14% DXS 12 0.13% CHI 11 0.12% XMT_MXMT_DXMT 10 0.11% CNMT 9 0.1% GGPPS 9 0.1% TDC 8 0.09% DET2 8 0.09% MVK 8 0.09% IDI 8 0.09% ADC 7 0.08% SMO1/SMO2 7 0.08% HDR/IspH 7 0.08% PMK 7 0.08% MVD 6 0.07% HDS/IspG 6 0.07% DWF1 5 0.05% DXR 5 0.05% GPPS 5 0.05% HMGS 4 0.04% CPI1 3 0.03% MCT/IspD 3 0.03% MDS/IspF 3 0.03% FLS 2 0.02% HYD1 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% ODC 1 0.01% DWF5 1 0.01% FK 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1159 19 UGT (366) View species results
Alkaloid pathway 710 26 7DLGT (174) View species results
Phenylpropanoid pathway 626 12 POD (221) View species results
Flavonoid pathway 436 15 UFGT (309) View species results
Rosmarinic acid pathway 308 7 C4H (144) View species results
Steroid pathway 210 12 CAS (119) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 651 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
CsetCse_sc000311.10040220 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc000311.10040240 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc001677.10155640 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
CsetCse_sc003038.10244280 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc006787.10437140 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
CsetCse_sc007164.10454130 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
CsetCse_sc009525.10552510 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc010113.10575020 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc010476.10588300 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc011745.10632750 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc013813.10700210 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc013813.10700240 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc016861.10789800 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc018841.10842570 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc018864.10843100 Alkaloid COR low borderline COR__00002__sp_Q9SQ67_COR14_PAPSO
CsetCse_sc043213.11247780 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO