PlantSME Plant secondary metabolism enzyme database

Citrullus lanatus (citrullus_lanatus)

Imported from atlas release summary for Citrullus lanatus.

1156
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.72% Alkaloid pathway 21.37% Phenylpropanoid pathway 19.55% Flavonoid pathway 14.71% Rosmarinic acid pathway 10.38% Steroid pathway 5.28%
Family Distribution
C4H 7.11% C3'H/CYP98A 6.37% BAHD 5.01% CYP76 4.55% IFS 4.45% UGT 4.38% UFGT 4.1% 7DLGT 3.99%
Other Families 60.04%
More Families (96)
4CL 108 3.78% POD 107 3.75% T3O 106 3.71% DWF4/CYP90B1 70 2.45% F3H 64 2.24% NMT 56 1.96% BR6OX2/CYP85A2 49 1.72% STR 48 1.68% F3'H/CYP75B 45 1.58% SMT1/SMT2/SMT3 39 1.37% PAL 36 1.26% CAD 36 1.26% CODM/T6ODM 35 1.23% H6H 34 1.19% TRI/TRII 32 1.12% IFR 32 1.12% LAC 32 1.12% CAS 32 1.12% SGD 29 1.02% IO 26 0.91% G8O/G8H 26 0.91% HCT 26 0.91% CYP71 25 0.88% GES 24 0.84% CYP90D1 24 0.84% BBE 23 0.81% TPS 23 0.81% GS 21 0.74% F3'5'H/CYP75A 21 0.74% CSE 20 0.7% TAT 20 0.7% RAS 19 0.67% PYKS 18 0.63% COMT 18 0.63% PMT 17 0.6% SLS 17 0.6% T16H 16 0.56% ANR 16 0.56% CCR 16 0.56% BR6OX1/CYP85A1 16 0.56% CYP51G1 16 0.56% 16OMT 14 0.49% FNS 14 0.49% F5H/CYP84A 14 0.49% NCS 13 0.46% COR 12 0.42% ROT3/CYP90C1 12 0.42% 7DLH 11 0.39% CPD/CYP90A1 10 0.35% 8HGO 9 0.32% LAMT 9 0.32% CYP719 8 0.28% ANS/LDOX 8 0.28% DFR 8 0.28% HPPR 8 0.28% CNMT 7 0.25% AACT 7 0.25% MPO 6 0.21% CYP80B1 6 0.21% CCoAOMT 6 0.21% DET2 6 0.21% CPR 5 0.18% SQS/FDFT1 5 0.18% SQE 5 0.18% FPPS 5 0.18% GGPPS 5 0.18% DXS 5 0.18% CHS 4 0.14% CHI 4 0.14% HMGR 4 0.14% MVK 4 0.14% ISY 3 0.11% TYDC_DDC 3 0.11% IDI 3 0.11% MVD 3 0.11% PMK 3 0.11% 6OMT_4OMT_SOMT 2 0.07% CYP80F1 2 0.07% ODC 2 0.07% SMO1/SMO2 2 0.07% DWF1 2 0.07% MCT/IspD 2 0.07% HDR/IspH 2 0.07% TDC 1 0.04% ADC 1 0.04% FLS 1 0.04% CPI1 1 0.04% HYD1 1 0.04% DWF7 1 0.04% DWF5 1 0.04% FK 1 0.04% HDS/IspG 1 0.04% CMK/IspE 1 0.04% DXR 1 0.04% MDS/IspF 1 0.04% HMGS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 332 19 UGT (114) View species results
Alkaloid pathway 247 21 7DLGT (54) View species results
Phenylpropanoid pathway 226 11 POD (101) View species results
Flavonoid pathway 170 9 UFGT (107) View species results
Rosmarinic acid pathway 120 7 C4H (51) View species results
Steroid pathway 61 11 CAS (26) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1162 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 188 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
citrullus_lanatus_ClG42_01g0005100.10 Alkaloid PMT medium borderline
citrullus_lanatus_ClG42_01g0135300.10 Alkaloid PMT medium borderline
citrullus_lanatus_ClG42_02g0081000.10 Alkaloid PMT medium pass
citrullus_lanatus_ClG42_05g0059900.10 Alkaloid PMT medium pass
citrullus_lanatus_ClG42_05g0069400.10 Alkaloid PMT low borderline
citrullus_lanatus_ClG42_05g0104100.10 Alkaloid PMT medium borderline
citrullus_lanatus_ClG42_05g0204400.10 Alkaloid PMT low borderline
citrullus_lanatus_ClG42_05g0272100.10 Alkaloid PMT medium borderline
citrullus_lanatus_ClG42_06g0050700.10 Alkaloid PMT low borderline
citrullus_lanatus_ClG42_06g0179600.10 Alkaloid PMT medium borderline
citrullus_lanatus_ClG42_06g0191000.10 Alkaloid PMT medium pass
citrullus_lanatus_ClG42_08g0114200.10 Alkaloid PMT medium pass
citrullus_lanatus_ClG42_08g0164200.10 Alkaloid PMT low borderline
citrullus_lanatus_ClG42_09g0034000.10 Alkaloid PMT low borderline
citrullus_lanatus_ClG42_10g0106800.10 Alkaloid PMT low borderline
citrullus_lanatus_ClG42_11g0029800.10 Alkaloid PMT medium pass
citrullus_lanatus_ClG42_11g0151500.10 Alkaloid PMT medium pass