PlantSME Plant secondary metabolism enzyme database

Cladopus chinensis (cladopus_chinensis)

Imported from atlas release summary for Cladopus chinensis.

1280
Candidate Protein Records
930
Pathway-Level Records
2256
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.2% Phenylpropanoid pathway 26.88% Alkaloid pathway 20.0% Flavonoid pathway 12.9% Rosmarinic acid pathway 7.42% Steroid pathway 5.59%
Family Distribution
POD 6.52% 4CL 5.85% C3'H/CYP98A 5.63% BAHD 5.63% C4H 5.1% T3O 3.59% NMT 3.15% IFS 2.88%
Other Families 61.66%
More Families (94)
7DLGT 62 2.75% CYP76 60 2.66% UGT 60 2.66% UFGT 59 2.62% CYP71 58 2.57% IFR 57 2.53% F3H 51 2.26% F3'H/CYP75B 47 2.08% STR 43 1.91% BR6OX2/CYP85A2 39 1.73% DWF4/CYP90B1 35 1.55% GS 33 1.46% LAC 33 1.46% CODM/T6ODM 32 1.42% PYKS 32 1.42% CSE 30 1.33% TRI/TRII 29 1.29% CAS 27 1.2% H6H 23 1.02% SMT1/SMT2/SMT3 23 1.02% CAD 22 0.98% CYP90D1 22 0.98% CPD/CYP90A1 20 0.89% SGD 18 0.8% PAL 18 0.8% BBE 17 0.75% CHS 16 0.71% SLS 15 0.66% COMT 15 0.66% CNMT 14 0.62% FPPS 14 0.62% G8O/G8H 13 0.58% FNS 13 0.58% ANR 13 0.58% AACT 13 0.58% GGPPS 13 0.58% T16H 11 0.49% CCR 11 0.49% MCT/IspD 11 0.49% 8HGO 10 0.44% DFR 10 0.44% CPR 10 0.44% RAS 10 0.44% CYP51G1 10 0.44% ADC 9 0.4% NCS 9 0.4% 7DLH 8 0.35% F3'5'H/CYP75A 8 0.35% HCT 8 0.35% TAT 8 0.35% SQS/FDFT1 8 0.35% DET2 8 0.35% PMT 7 0.31% MPO 7 0.31% DXS 7 0.31% IO 6 0.27% GES 6 0.27% F5H/CYP84A 6 0.27% BR6OX1/CYP85A1 6 0.27% CMK/IspE 6 0.27% HDR/IspH 6 0.27% 16OMT 5 0.22% TYDC_DDC 5 0.22% ROT3/CYP90C1 5 0.22% TPS 5 0.22% DXR 5 0.22% COR 4 0.18% CYP719 4 0.18% CCoAOMT 4 0.18% MDS/IspF 4 0.18% HDS/IspG 4 0.18% IDI 4 0.18% CYP80B1 3 0.13% TDC 3 0.13% ISY 3 0.13% CHI 3 0.13% ANS/LDOX 3 0.13% SQE 3 0.13% PMK 3 0.13% LAMT 2 0.09% FLS 2 0.09% HPPR 2 0.09% FK 2 0.09% SMO1/SMO2 2 0.09% CPI1 2 0.09% DWF7 2 0.09% DWF1 2 0.09% MVK 2 0.09% HMGR 2 0.09% MVD 2 0.09% ODC 1 0.04% XMT_MXMT_DXMT 1 0.04% HYD1 1 0.04% GPPS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 253 19 BAHD (100) View species results
Phenylpropanoid pathway 250 11 POD (132) View species results
Alkaloid pathway 186 16 NMT (38) View species results
Flavonoid pathway 120 9 UFGT (54) View species results
Rosmarinic acid pathway 69 7 4CL (22) View species results
Steroid pathway 52 11 CAS (23) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 764 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 145 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
CLchi26G0000510.1 Rosmarinic Acid C4H low borderline
CLchi26G0005010.1 Rosmarinic Acid C4H low borderline
CLchi27G0000220.1 Rosmarinic Acid C4H low borderline
CLchi27G0000250.1 Rosmarinic Acid C4H low borderline
CLchi27G0001390.1 Rosmarinic Acid C4H low borderline
CLchi27G0004350.1 Rosmarinic Acid C4H medium pass
CLchi27G0004360.1 Rosmarinic Acid C4H low borderline
CLchi27G0004380.1 Rosmarinic Acid C4H low borderline
CLchi27G0004390.1 Rosmarinic Acid C4H low borderline
CLchi27G0004400.1 Rosmarinic Acid C4H low borderline
CLchi27G0006690.1 Rosmarinic Acid C4H medium pass
CLchi27G0008820.1 Rosmarinic Acid C4H low borderline
CLchiGWHACFD000000370000220.1 Rosmarinic Acid C4H medium pass
CLchiGWHACFD000001040005840.1 Rosmarinic Acid C4H low borderline