PlantSME Plant secondary metabolism enzyme database

Cladopus chinensis (cladopus_chinensis)

Imported from atlas release summary for Cladopus chinensis.

930
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.2% Phenylpropanoid pathway 26.88% Alkaloid pathway 20.0% Flavonoid pathway 12.9% Rosmarinic acid pathway 7.42% Steroid pathway 5.59%
Family Distribution
POD 6.52% 4CL 5.85% C3'H/CYP98A 5.63% BAHD 5.63% C4H 5.1% T3O 3.59% NMT 3.15% IFS 2.88%
Other Families 61.66%
More Families (94)
7DLGT 62 2.75% CYP76 60 2.66% UGT 60 2.66% UFGT 59 2.62% CYP71 58 2.57% IFR 57 2.53% F3H 51 2.26% F3'H/CYP75B 47 2.08% STR 43 1.91% BR6OX2/CYP85A2 39 1.73% DWF4/CYP90B1 35 1.55% GS 33 1.46% LAC 33 1.46% CODM/T6ODM 32 1.42% PYKS 32 1.42% CSE 30 1.33% TRI/TRII 29 1.29% CAS 27 1.2% H6H 23 1.02% SMT1/SMT2/SMT3 23 1.02% CAD 22 0.98% CYP90D1 22 0.98% CPD/CYP90A1 20 0.89% SGD 18 0.8% PAL 18 0.8% BBE 17 0.75% CHS 16 0.71% SLS 15 0.66% COMT 15 0.66% CNMT 14 0.62% FPPS 14 0.62% G8O/G8H 13 0.58% FNS 13 0.58% ANR 13 0.58% AACT 13 0.58% GGPPS 13 0.58% T16H 11 0.49% CCR 11 0.49% MCT/IspD 11 0.49% 8HGO 10 0.44% DFR 10 0.44% CPR 10 0.44% RAS 10 0.44% CYP51G1 10 0.44% ADC 9 0.4% NCS 9 0.4% 7DLH 8 0.35% F3'5'H/CYP75A 8 0.35% HCT 8 0.35% TAT 8 0.35% SQS/FDFT1 8 0.35% DET2 8 0.35% PMT 7 0.31% MPO 7 0.31% DXS 7 0.31% IO 6 0.27% GES 6 0.27% F5H/CYP84A 6 0.27% BR6OX1/CYP85A1 6 0.27% CMK/IspE 6 0.27% HDR/IspH 6 0.27% 16OMT 5 0.22% TYDC_DDC 5 0.22% ROT3/CYP90C1 5 0.22% TPS 5 0.22% DXR 5 0.22% COR 4 0.18% CYP719 4 0.18% CCoAOMT 4 0.18% MDS/IspF 4 0.18% HDS/IspG 4 0.18% IDI 4 0.18% CYP80B1 3 0.13% TDC 3 0.13% ISY 3 0.13% CHI 3 0.13% ANS/LDOX 3 0.13% SQE 3 0.13% PMK 3 0.13% LAMT 2 0.09% FLS 2 0.09% HPPR 2 0.09% FK 2 0.09% SMO1/SMO2 2 0.09% CPI1 2 0.09% DWF7 2 0.09% DWF1 2 0.09% MVK 2 0.09% HMGR 2 0.09% MVD 2 0.09% ODC 1 0.04% XMT_MXMT_DXMT 1 0.04% HYD1 1 0.04% GPPS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 253 19 BAHD (100) View species results
Phenylpropanoid pathway 250 11 POD (132) View species results
Alkaloid pathway 186 16 NMT (38) View species results
Flavonoid pathway 120 9 UFGT (54) View species results
Rosmarinic acid pathway 69 7 4CL (22) View species results
Steroid pathway 52 11 CAS (23) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 764 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 145 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
CLchi07G0003960.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
CLchi09G0000690.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
CLchi09G0004400.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
CLchi09G0004950.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
CLchi11G0003200.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
CLchi12G0006170.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
CLchi15G0005620.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
CLchi28G0001510.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
CLchiGWHACFD000000220000470.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO