PlantSME Plant secondary metabolism enzyme database

Cladopus chinensis (cladopus_chinensis)

Imported from atlas release summary for Cladopus chinensis.

930
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.2% Phenylpropanoid pathway 26.88% Alkaloid pathway 20.0% Flavonoid pathway 12.9% Rosmarinic acid pathway 7.42% Steroid pathway 5.59%
Family Distribution
POD 6.52% 4CL 5.85% C3'H/CYP98A 5.63% BAHD 5.63% C4H 5.1% T3O 3.59% NMT 3.15% IFS 2.88%
Other Families 61.66%
More Families (94)
7DLGT 62 2.75% CYP76 60 2.66% UGT 60 2.66% UFGT 59 2.62% CYP71 58 2.57% IFR 57 2.53% F3H 51 2.26% F3'H/CYP75B 47 2.08% STR 43 1.91% BR6OX2/CYP85A2 39 1.73% DWF4/CYP90B1 35 1.55% GS 33 1.46% LAC 33 1.46% CODM/T6ODM 32 1.42% PYKS 32 1.42% CSE 30 1.33% TRI/TRII 29 1.29% CAS 27 1.2% H6H 23 1.02% SMT1/SMT2/SMT3 23 1.02% CAD 22 0.98% CYP90D1 22 0.98% CPD/CYP90A1 20 0.89% SGD 18 0.8% PAL 18 0.8% BBE 17 0.75% CHS 16 0.71% SLS 15 0.66% COMT 15 0.66% CNMT 14 0.62% FPPS 14 0.62% G8O/G8H 13 0.58% FNS 13 0.58% ANR 13 0.58% AACT 13 0.58% GGPPS 13 0.58% T16H 11 0.49% CCR 11 0.49% MCT/IspD 11 0.49% 8HGO 10 0.44% DFR 10 0.44% CPR 10 0.44% RAS 10 0.44% CYP51G1 10 0.44% ADC 9 0.4% NCS 9 0.4% 7DLH 8 0.35% F3'5'H/CYP75A 8 0.35% HCT 8 0.35% TAT 8 0.35% SQS/FDFT1 8 0.35% DET2 8 0.35% PMT 7 0.31% MPO 7 0.31% DXS 7 0.31% IO 6 0.27% GES 6 0.27% F5H/CYP84A 6 0.27% BR6OX1/CYP85A1 6 0.27% CMK/IspE 6 0.27% HDR/IspH 6 0.27% 16OMT 5 0.22% TYDC_DDC 5 0.22% ROT3/CYP90C1 5 0.22% TPS 5 0.22% DXR 5 0.22% COR 4 0.18% CYP719 4 0.18% CCoAOMT 4 0.18% MDS/IspF 4 0.18% HDS/IspG 4 0.18% IDI 4 0.18% CYP80B1 3 0.13% TDC 3 0.13% ISY 3 0.13% CHI 3 0.13% ANS/LDOX 3 0.13% SQE 3 0.13% PMK 3 0.13% LAMT 2 0.09% FLS 2 0.09% HPPR 2 0.09% FK 2 0.09% SMO1/SMO2 2 0.09% CPI1 2 0.09% DWF7 2 0.09% DWF1 2 0.09% MVK 2 0.09% HMGR 2 0.09% MVD 2 0.09% ODC 1 0.04% XMT_MXMT_DXMT 1 0.04% HYD1 1 0.04% GPPS 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 253 19 BAHD (100) View species results
Phenylpropanoid pathway 250 11 POD (132) View species results
Alkaloid pathway 186 16 NMT (38) View species results
Flavonoid pathway 120 9 UFGT (54) View species results
Rosmarinic acid pathway 69 7 4CL (22) View species results
Steroid pathway 52 11 CAS (23) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 764 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 145 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
CLchi20G0000080.1 Steroid SMT1/SMT2/SMT3 low borderline
CLchi21G0004570.1 Steroid SMT1/SMT2/SMT3 medium pass
CLchi24G0009320.1 Steroid SMT1/SMT2/SMT3 medium pass
CLchi24G0009590.1 Steroid SMT1/SMT2/SMT3 low borderline
CLchi25G0004410.1 Steroid SMT1/SMT2/SMT3 medium pass
CLchi28G0002610.1 Steroid SMT1/SMT2/SMT3 low borderline
CLchi14G0007430.1 Steroid SQE medium pass
CLchi14G0008210.1 Steroid SQE medium pass
CLchi24G0002920.1 Steroid SQE low borderline
CLchi02G0008980.1 Steroid SQS/FDFT1 low borderline
CLchi04G0013550.1 Steroid SQS/FDFT1 high pass
CLchi06G0000750.1 Steroid SQS/FDFT1 high pass
CLchi08G0011550.1 Steroid SQS/FDFT1 medium pass
CLchi12G0003490.1 Steroid SQS/FDFT1 low borderline
CLchi13G0003090.1 Steroid SQS/FDFT1 low borderline
CLchiGWHACFD000001040004580.1 Steroid SQS/FDFT1 low borderline
CLchiGWHACFD000004400025180.1 Steroid SQS/FDFT1 low borderline