PlantSME Plant secondary metabolism enzyme database

Corymbia citriodora (corymbia_citriodora)

Imported from atlas release summary for Corymbia citriodora.

3563
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.97% Alkaloid pathway 22.14% Phenylpropanoid pathway 18.55% Flavonoid pathway 15.46% Rosmarinic acid pathway 7.77% Steroid pathway 6.09%
Family Distribution
C3'H/CYP98A 5.82% UGT 5.67% C4H 5.59% 7DLGT 5.51% UFGT 5.49% BAHD 5.13% IFS 3.84% CYP76 3.64%
Other Families 59.31%
More Families (96)
T3O 259 3.28% POD 249 3.16% 4CL 225 2.85% DWF4/CYP90B1 207 2.62% CAD 200 2.54% F3H 193 2.45% F3'H/CYP75B 150 1.9% CAS 145 1.84% TPS 145 1.84% SMT1/SMT2/SMT3 143 1.81% GES 142 1.8% NMT 138 1.75% CODM/T6ODM 114 1.45% STR 110 1.39% BR6OX2/CYP85A2 99 1.26% LAC 89 1.13% CSE 85 1.08% HCT 77 0.98% TRI/TRII 74 0.94% GS 73 0.93% CYP71 73 0.93% COMT 72 0.91% IFR 70 0.89% H6H 68 0.86% ANR 66 0.84% CYP90D1 63 0.8% PMT 62 0.79% IO 61 0.77% RAS 58 0.74% TAT 57 0.72% COR 53 0.67% CPD/CYP90A1 52 0.66% 16OMT 50 0.63% 7DLH 49 0.62% SLS 49 0.62% SGD 46 0.58% NCS 45 0.57% G8O/G8H 44 0.56% CCR 44 0.56% CYP51G1 42 0.53% LAMT 40 0.51% BBE 39 0.49% PYKS 36 0.46% F3'5'H/CYP75A 35 0.44% T16H 32 0.41% PAL 30 0.38% F5H/CYP84A 28 0.35% FNS 27 0.34% CCoAOMT 27 0.34% 8HGO 26 0.33% BR6OX1/CYP85A1 23 0.29% HPPR 18 0.23% CNMT 17 0.22% CYP719 15 0.19% SQS/FDFT1 15 0.19% ROT3/CYP90C1 13 0.16% FPPS 13 0.16% MPO 12 0.15% DFR 12 0.15% CPR 12 0.15% SQE 12 0.15% GGPPS 12 0.15% CYP80B1 11 0.14% CHS 11 0.14% TYDC_DDC 10 0.13% DET2 9 0.11% HMGR 9 0.11% DXS 8 0.1% XMT_MXMT_DXMT 7 0.09% SMO1/SMO2 7 0.09% AACT 7 0.09% ANS/LDOX 6 0.08% MVD 6 0.08% CHI 5 0.06% MVK 5 0.06% MCT/IspD 4 0.05% TDC 3 0.04% 6OMT_4OMT_SOMT 3 0.04% DXR 3 0.04% PMK 3 0.04% ISY 2 0.03% CYP80F1 2 0.03% FK 2 0.03% DWF5 2 0.03% HYD1 2 0.03% DWF7 2 0.03% IDI 2 0.03% HDR/IspH 2 0.03% MDS/IspF 2 0.03% HMGS 2 0.03% ODC 1 0.01% ADC 1 0.01% DWF1 1 0.01% CPI1 1 0.01% HDS/IspG 1 0.01% CMK/IspE 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1068 19 UGT (421) View species results
Alkaloid pathway 789 22 7DLGT (225) View species results
Phenylpropanoid pathway 661 12 POD (243) View species results
Flavonoid pathway 551 9 UFGT (423) View species results
Rosmarinic acid pathway 277 7 C4H (121) View species results
Steroid pathway 217 13 SMT1/SMT2/SMT3 (97) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2797 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 540 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Ccit01G0015490.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Ccit03G0012300.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Ccit05G0016370.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Ccit05G0016480.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Ccit11G0008900.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Ccit11G0008920.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Ccit11G0012780.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Ccit11G0012790.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Ccit11G0015250.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Ccitscaffold830053600.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO