PlantSME Plant secondary metabolism enzyme database

Cucumis sativus (cucumis_sativus)

Imported from atlas release summary for Cucumis sativus.

1183
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.77% Alkaloid pathway 20.54% Phenylpropanoid pathway 20.37% Flavonoid pathway 13.78% Rosmarinic acid pathway 8.96% Steroid pathway 5.58%
Family Distribution
C4H 6.84% BAHD 5.56% C3'H/CYP98A 4.91% UGT 4.44% CYP76 4.25% IFS 4.04% 4CL 4.04% POD 3.85%
Other Families 62.07%
More Families (94)
7DLGT 102 3.71% UFGT 101 3.67% T3O 82 2.98% F3H 74 2.69% DWF4/CYP90B1 69 2.51% NMT 62 2.25% STR 48 1.75% PAL 48 1.75% CODM/T6ODM 43 1.56% F3'H/CYP75B 39 1.42% CAD 38 1.38% H6H 36 1.31% TPS 36 1.31% CAS 35 1.27% BR6OX2/CYP85A2 35 1.27% TRI/TRII 32 1.16% SMT1/SMT2/SMT3 32 1.16% GES 31 1.13% SGD 29 1.05% HCT 29 1.05% IFR 28 1.02% CSE 27 0.98% RAS 25 0.91% G8O/G8H 23 0.84% T16H 23 0.84% F3'5'H/CYP75A 23 0.84% LAC 22 0.8% PMT 20 0.73% BBE 20 0.73% SLS 20 0.73% GS 20 0.73% CCR 20 0.73% CYP90D1 20 0.73% ANR 19 0.69% COMT 19 0.69% FNS 18 0.65% TAT 18 0.65% IO 17 0.62% CYP71 17 0.62% PYKS 16 0.58% NCS 16 0.58% 16OMT 16 0.58% CPD/CYP90A1 16 0.58% F5H/CYP84A 15 0.55% COR 14 0.51% 8HGO 13 0.47% 7DLH 12 0.44% CYP719 11 0.4% BR6OX1/CYP85A1 11 0.4% CNMT 10 0.36% CYP80B1 10 0.36% LAMT 10 0.36% ANS/LDOX 9 0.33% DFR 9 0.33% AACT 9 0.33% MPO 8 0.29% ROT3/CYP90C1 8 0.29% HPPR 6 0.22% FPPS 6 0.22% CPR 5 0.18% SQS/FDFT1 5 0.18% GGPPS 5 0.18% CHS 4 0.15% CHI 4 0.15% CYP51G1 4 0.15% DXS 4 0.15% MVD 4 0.15% CCoAOMT 3 0.11% SQE 3 0.11% DET2 3 0.11% MVK 3 0.11% HMGR 3 0.11% ISY 2 0.07% TYDC_DDC 2 0.07% ODC 2 0.07% CPI1 2 0.07% SMO1/SMO2 2 0.07% DWF7 2 0.07% DWF1 2 0.07% IDI 2 0.07% HDR/IspH 2 0.07% MCT/IspD 2 0.07% ADC 1 0.04% TDC 1 0.04% FLS 1 0.04% FK 1 0.04% HYD1 1 0.04% DWF5 1 0.04% DXR 1 0.04% HDS/IspG 1 0.04% CMK/IspE 1 0.04% HMGS 1 0.04% PMK 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 364 19 BAHD (122) View species results
Alkaloid pathway 243 21 7DLGT (45) View species results
Phenylpropanoid pathway 241 12 POD (104) View species results
Flavonoid pathway 163 11 UFGT (92) View species results
Rosmarinic acid pathway 106 7 C4H (32) View species results
Steroid pathway 66 11 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1006 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 207 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGR
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Gene Pathway Family Confidence Status Best Target
CUsat06G0010400.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
CUsat06G0021790.1 Terpenoid HMGR medium pass HMGR__00001__sp_A0A0A1C3I2_HMGR1_PANGI
CUsat07G0002320.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI