Cucumis sativus (cucumis_sativus)
Imported from atlas release summary for Cucumis sativus.
1183
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1183
Candidate Genes
C4H
6.84%
BAHD
5.56%
C3'H/CYP98A
4.91%
UGT
4.44%
CYP76
4.25%
IFS
4.04%
4CL
4.04%
POD
3.85%
Other Families
62.07%
More Families (94)
7DLGT
102
3.71%
UFGT
101
3.67%
T3O
82
2.98%
F3H
74
2.69%
DWF4/CYP90B1
69
2.51%
NMT
62
2.25%
STR
48
1.75%
PAL
48
1.75%
CODM/T6ODM
43
1.56%
F3'H/CYP75B
39
1.42%
CAD
38
1.38%
H6H
36
1.31%
TPS
36
1.31%
CAS
35
1.27%
BR6OX2/CYP85A2
35
1.27%
TRI/TRII
32
1.16%
SMT1/SMT2/SMT3
32
1.16%
GES
31
1.13%
SGD
29
1.05%
HCT
29
1.05%
IFR
28
1.02%
CSE
27
0.98%
RAS
25
0.91%
G8O/G8H
23
0.84%
T16H
23
0.84%
F3'5'H/CYP75A
23
0.84%
LAC
22
0.8%
PMT
20
0.73%
BBE
20
0.73%
SLS
20
0.73%
GS
20
0.73%
CCR
20
0.73%
CYP90D1
20
0.73%
ANR
19
0.69%
COMT
19
0.69%
FNS
18
0.65%
TAT
18
0.65%
IO
17
0.62%
CYP71
17
0.62%
PYKS
16
0.58%
NCS
16
0.58%
16OMT
16
0.58%
CPD/CYP90A1
16
0.58%
F5H/CYP84A
15
0.55%
COR
14
0.51%
8HGO
13
0.47%
7DLH
12
0.44%
CYP719
11
0.4%
BR6OX1/CYP85A1
11
0.4%
CNMT
10
0.36%
CYP80B1
10
0.36%
LAMT
10
0.36%
ANS/LDOX
9
0.33%
DFR
9
0.33%
AACT
9
0.33%
MPO
8
0.29%
ROT3/CYP90C1
8
0.29%
HPPR
6
0.22%
FPPS
6
0.22%
CPR
5
0.18%
SQS/FDFT1
5
0.18%
GGPPS
5
0.18%
CHS
4
0.15%
CHI
4
0.15%
CYP51G1
4
0.15%
DXS
4
0.15%
MVD
4
0.15%
CCoAOMT
3
0.11%
SQE
3
0.11%
DET2
3
0.11%
MVK
3
0.11%
HMGR
3
0.11%
ISY
2
0.07%
TYDC_DDC
2
0.07%
ODC
2
0.07%
CPI1
2
0.07%
SMO1/SMO2
2
0.07%
DWF7
2
0.07%
DWF1
2
0.07%
IDI
2
0.07%
HDR/IspH
2
0.07%
MCT/IspD
2
0.07%
ADC
1
0.04%
TDC
1
0.04%
FLS
1
0.04%
FK
1
0.04%
HYD1
1
0.04%
DWF5
1
0.04%
DXR
1
0.04%
HDS/IspG
1
0.04%
CMK/IspE
1
0.04%
HMGS
1
0.04%
PMK
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 364 | 19 | BAHD (122) | View species results |
| Alkaloid pathway | 243 | 21 | 7DLGT (45) | View species results |
| Phenylpropanoid pathway | 241 | 12 | POD (104) | View species results |
| Flavonoid pathway | 163 | 11 | UFGT (92) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (32) | View species results |
| Steroid pathway | 66 | 11 | CAS (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1006 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 207 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CUsat01G0004720.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CUsat01G0007590.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat01G0008070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat01G0013920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat01G0019700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat02G0000100.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CUsat02G0001520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat02G0010290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat02G0017150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat02G0024150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat02G0028870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0000420.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| CUsat03G0004640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0006470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0006480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0016760.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CUsat03G0018510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0024590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0025640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0033320.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0034990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0035000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0035330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0035340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0036680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0037880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0037890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat03G0038800.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CUsat03G0038810.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CUsat04G0007430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat04G0008290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat04G0011350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat05G0013130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat05G0013140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat05G0013190.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CUsat05G0017030.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat05G0025890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0013270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0014830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0020340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0024990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0025190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0025210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0025730.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0026400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat06G0030790.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat07G0013410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CUsat07G0021750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |