PlantSME Plant secondary metabolism enzyme database

Cymbidium goeringii (cymbidium_goeringii)

Imported from atlas release summary for Cymbidium goeringii.

1262
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.43% Alkaloid pathway 22.11% Phenylpropanoid pathway 20.44% Flavonoid pathway 13.71% Steroid pathway 6.89% Rosmarinic acid pathway 6.42%
Family Distribution
C4H 5.88% BAHD 5.48% C3'H/CYP98A 5.41% 4CL 4.31% UGT 4.01% POD 3.87% 7DLGT 3.34% IFS 3.27%
Other Families 64.43%
More Families (95)
UFGT 93 3.11% CYP76 93 3.11% T3O 87 2.91% F3H 84 2.81% TPS 74 2.47% DWF4/CYP90B1 72 2.4% NMT 70 2.34% CAD 63 2.1% F3'H/CYP75B 61 2.04% CAS 59 1.97% STR 53 1.77% GES 51 1.7% SMT1/SMT2/SMT3 49 1.64% H6H 48 1.6% IFR 42 1.4% TRI/TRII 40 1.34% CYP71 40 1.34% CODM/T6ODM 39 1.3% CYP90D1 36 1.2% BR6OX2/CYP85A2 34 1.14% SGD 31 1.04% LAC 30 1.0% CSE 29 0.97% GS 28 0.94% T16H 28 0.94% COMT 28 0.94% PYKS 27 0.9% G8O/G8H 25 0.84% 8HGO 22 0.73% SLS 21 0.7% BR6OX1/CYP85A1 21 0.7% NCS 20 0.67% CCR 20 0.67% DFR 19 0.63% IO 18 0.6% ANR 18 0.6% 16OMT 16 0.53% F3'5'H/CYP75A 15 0.5% PAL 15 0.5% RAS 15 0.5% ROT3/CYP90C1 15 0.5% CYP51G1 15 0.5% BBE 14 0.47% CCoAOMT 14 0.47% PMT 13 0.43% FNS 13 0.43% HCT 12 0.4% CNMT 11 0.37% F5H/CYP84A 11 0.37% COR 10 0.33% CHS 9 0.3% SQE 9 0.3% MPO 8 0.27% CYP719 8 0.27% ANS/LDOX 8 0.27% 7DLH 7 0.23% CPD/CYP90A1 7 0.23% CPR 6 0.2% DET2 6 0.2% MVD 6 0.2% TDC 5 0.17% TAT 5 0.17% GGPPS 5 0.17% FPPS 5 0.17% CYP80B1 4 0.13% ADC 4 0.13% LAMT 4 0.13% HPPR 4 0.13% SQS/FDFT1 4 0.13% MVK 4 0.13% AACT 4 0.13% PMK 4 0.13% HMGR 4 0.13% CHI 3 0.1% SMO1/SMO2 3 0.1% IDI 3 0.1% DXS 3 0.1% ISY 2 0.07% XMT_MXMT_DXMT 2 0.07% TYDC_DDC 2 0.07% FLS 2 0.07% HDR/IspH 2 0.07% CMK/IspE 2 0.07% MDS/IspF 2 0.07% CYP80F1 1 0.03% DWF5 1 0.03% HYD1 1 0.03% DWF1 1 0.03% FK 1 0.03% CPI1 1 0.03% DWF7 1 0.03% MCT/IspD 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 384 19 BAHD (129) View species results
Alkaloid pathway 279 18 7DLGT (47) View species results
Phenylpropanoid pathway 258 13 POD (93) View species results
Flavonoid pathway 173 13 UFGT (87) View species results
Steroid pathway 87 11 CAS (40) View species results
Rosmarinic acid pathway 81 7 4CL (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1055 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 191 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
cymbidium_goeringii_g31183 Rosmarinic Acid HPPR low borderline HPPR__00001__sp_Q65CJ7_HPPR_PLESU
cymbidium_goeringii_g7807 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
cymbidium_goeringii_gene_2002 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
cymbidium_goeringii_gene_4298 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU