Cymbidium goeringii (cymbidium_goeringii)
Imported from atlas release summary for Cymbidium goeringii.
1262
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1262
Candidate Genes
C4H
5.88%
BAHD
5.48%
C3'H/CYP98A
5.41%
4CL
4.31%
UGT
4.01%
POD
3.87%
7DLGT
3.34%
IFS
3.27%
Other Families
64.43%
More Families (95)
UFGT
93
3.11%
CYP76
93
3.11%
T3O
87
2.91%
F3H
84
2.81%
TPS
74
2.47%
DWF4/CYP90B1
72
2.4%
NMT
70
2.34%
CAD
63
2.1%
F3'H/CYP75B
61
2.04%
CAS
59
1.97%
STR
53
1.77%
GES
51
1.7%
SMT1/SMT2/SMT3
49
1.64%
H6H
48
1.6%
IFR
42
1.4%
TRI/TRII
40
1.34%
CYP71
40
1.34%
CODM/T6ODM
39
1.3%
CYP90D1
36
1.2%
BR6OX2/CYP85A2
34
1.14%
SGD
31
1.04%
LAC
30
1.0%
CSE
29
0.97%
GS
28
0.94%
T16H
28
0.94%
COMT
28
0.94%
PYKS
27
0.9%
G8O/G8H
25
0.84%
8HGO
22
0.73%
SLS
21
0.7%
BR6OX1/CYP85A1
21
0.7%
NCS
20
0.67%
CCR
20
0.67%
DFR
19
0.63%
IO
18
0.6%
ANR
18
0.6%
16OMT
16
0.53%
F3'5'H/CYP75A
15
0.5%
PAL
15
0.5%
RAS
15
0.5%
ROT3/CYP90C1
15
0.5%
CYP51G1
15
0.5%
BBE
14
0.47%
CCoAOMT
14
0.47%
PMT
13
0.43%
FNS
13
0.43%
HCT
12
0.4%
CNMT
11
0.37%
F5H/CYP84A
11
0.37%
COR
10
0.33%
CHS
9
0.3%
SQE
9
0.3%
MPO
8
0.27%
CYP719
8
0.27%
ANS/LDOX
8
0.27%
7DLH
7
0.23%
CPD/CYP90A1
7
0.23%
CPR
6
0.2%
DET2
6
0.2%
MVD
6
0.2%
TDC
5
0.17%
TAT
5
0.17%
GGPPS
5
0.17%
FPPS
5
0.17%
CYP80B1
4
0.13%
ADC
4
0.13%
LAMT
4
0.13%
HPPR
4
0.13%
SQS/FDFT1
4
0.13%
MVK
4
0.13%
AACT
4
0.13%
PMK
4
0.13%
HMGR
4
0.13%
CHI
3
0.1%
SMO1/SMO2
3
0.1%
IDI
3
0.1%
DXS
3
0.1%
ISY
2
0.07%
XMT_MXMT_DXMT
2
0.07%
TYDC_DDC
2
0.07%
FLS
2
0.07%
HDR/IspH
2
0.07%
CMK/IspE
2
0.07%
MDS/IspF
2
0.07%
CYP80F1
1
0.03%
DWF5
1
0.03%
HYD1
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
DWF7
1
0.03%
MCT/IspD
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 384 | 19 | BAHD (129) | View species results |
| Alkaloid pathway | 279 | 18 | 7DLGT (47) | View species results |
| Phenylpropanoid pathway | 258 | 13 | POD (93) | View species results |
| Flavonoid pathway | 173 | 13 | UFGT (87) | View species results |
| Steroid pathway | 87 | 11 | CAS (40) | View species results |
| Rosmarinic acid pathway | 81 | 7 | 4CL (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1055 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 191 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| cymbidium_goeringii_g24535 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| cymbidium_goeringii_g35481 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| cymbidium_goeringii_g39343 | Alkaloid | SLS | low | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_g5987 | Alkaloid | SLS | low | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_g60572 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| cymbidium_goeringii_g62715 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| cymbidium_goeringii_g69856 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_g752 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_12672 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_13246 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_15436 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_1849 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_1850 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_2493 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_3098 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| cymbidium_goeringii_gene_671 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_7509 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| cymbidium_goeringii_gene_8053 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_8133 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| cymbidium_goeringii_gene_8417 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| cymbidium_goeringii_gene_9292 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |