PlantSME Plant secondary metabolism enzyme database

Cymbidium goeringii (cymbidium_goeringii)

Imported from atlas release summary for Cymbidium goeringii.

1262
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.43% Alkaloid pathway 22.11% Phenylpropanoid pathway 20.44% Flavonoid pathway 13.71% Steroid pathway 6.89% Rosmarinic acid pathway 6.42%
Family Distribution
C4H 5.88% BAHD 5.48% C3'H/CYP98A 5.41% 4CL 4.31% UGT 4.01% POD 3.87% 7DLGT 3.34% IFS 3.27%
Other Families 64.43%
More Families (95)
UFGT 93 3.11% CYP76 93 3.11% T3O 87 2.91% F3H 84 2.81% TPS 74 2.47% DWF4/CYP90B1 72 2.4% NMT 70 2.34% CAD 63 2.1% F3'H/CYP75B 61 2.04% CAS 59 1.97% STR 53 1.77% GES 51 1.7% SMT1/SMT2/SMT3 49 1.64% H6H 48 1.6% IFR 42 1.4% TRI/TRII 40 1.34% CYP71 40 1.34% CODM/T6ODM 39 1.3% CYP90D1 36 1.2% BR6OX2/CYP85A2 34 1.14% SGD 31 1.04% LAC 30 1.0% CSE 29 0.97% GS 28 0.94% T16H 28 0.94% COMT 28 0.94% PYKS 27 0.9% G8O/G8H 25 0.84% 8HGO 22 0.73% SLS 21 0.7% BR6OX1/CYP85A1 21 0.7% NCS 20 0.67% CCR 20 0.67% DFR 19 0.63% IO 18 0.6% ANR 18 0.6% 16OMT 16 0.53% F3'5'H/CYP75A 15 0.5% PAL 15 0.5% RAS 15 0.5% ROT3/CYP90C1 15 0.5% CYP51G1 15 0.5% BBE 14 0.47% CCoAOMT 14 0.47% PMT 13 0.43% FNS 13 0.43% HCT 12 0.4% CNMT 11 0.37% F5H/CYP84A 11 0.37% COR 10 0.33% CHS 9 0.3% SQE 9 0.3% MPO 8 0.27% CYP719 8 0.27% ANS/LDOX 8 0.27% 7DLH 7 0.23% CPD/CYP90A1 7 0.23% CPR 6 0.2% DET2 6 0.2% MVD 6 0.2% TDC 5 0.17% TAT 5 0.17% GGPPS 5 0.17% FPPS 5 0.17% CYP80B1 4 0.13% ADC 4 0.13% LAMT 4 0.13% HPPR 4 0.13% SQS/FDFT1 4 0.13% MVK 4 0.13% AACT 4 0.13% PMK 4 0.13% HMGR 4 0.13% CHI 3 0.1% SMO1/SMO2 3 0.1% IDI 3 0.1% DXS 3 0.1% ISY 2 0.07% XMT_MXMT_DXMT 2 0.07% TYDC_DDC 2 0.07% FLS 2 0.07% HDR/IspH 2 0.07% CMK/IspE 2 0.07% MDS/IspF 2 0.07% CYP80F1 1 0.03% DWF5 1 0.03% HYD1 1 0.03% DWF1 1 0.03% FK 1 0.03% CPI1 1 0.03% DWF7 1 0.03% MCT/IspD 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 384 19 BAHD (129) View species results
Alkaloid pathway 279 18 7DLGT (47) View species results
Phenylpropanoid pathway 258 13 POD (93) View species results
Flavonoid pathway 173 13 UFGT (87) View species results
Steroid pathway 87 11 CAS (40) View species results
Rosmarinic acid pathway 81 7 4CL (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1055 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 191 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
cymbidium_goeringii_gene_12064 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
cymbidium_goeringii_gene_12489 Alkaloid NMT medium pass NMT__00027__sp_Q10MI4_EZ1_ORYSJ
cymbidium_goeringii_gene_12934 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
cymbidium_goeringii_gene_13158 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
cymbidium_goeringii_gene_13664 Alkaloid NMT medium pass NMT__00034__sp_Q5VN06_CLF_ORYSJ
cymbidium_goeringii_gene_13859 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
cymbidium_goeringii_gene_14223 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
cymbidium_goeringii_gene_1646 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
cymbidium_goeringii_gene_3037 Alkaloid NMT medium borderline NMT__00015__sp_C8YTM5_PEAM2_WHEAT
cymbidium_goeringii_gene_3345 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
cymbidium_goeringii_gene_3619 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
cymbidium_goeringii_gene_4072 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
cymbidium_goeringii_gene_5435 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
cymbidium_goeringii_gene_546 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
cymbidium_goeringii_gene_6435 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
cymbidium_goeringii_gene_8077 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
cymbidium_goeringii_gene_8169 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
cymbidium_goeringii_gene_8583 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
cymbidium_goeringii_gene_868 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
cymbidium_goeringii_gene_8943 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH