PlantSME Plant secondary metabolism enzyme database

Cymbidium goeringii (cymbidium_goeringii)

Imported from atlas release summary for Cymbidium goeringii.

1262
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.43% Alkaloid pathway 22.11% Phenylpropanoid pathway 20.44% Flavonoid pathway 13.71% Steroid pathway 6.89% Rosmarinic acid pathway 6.42%
Family Distribution
C4H 5.88% BAHD 5.48% C3'H/CYP98A 5.41% 4CL 4.31% UGT 4.01% POD 3.87% 7DLGT 3.34% IFS 3.27%
Other Families 64.43%
More Families (95)
UFGT 93 3.11% CYP76 93 3.11% T3O 87 2.91% F3H 84 2.81% TPS 74 2.47% DWF4/CYP90B1 72 2.4% NMT 70 2.34% CAD 63 2.1% F3'H/CYP75B 61 2.04% CAS 59 1.97% STR 53 1.77% GES 51 1.7% SMT1/SMT2/SMT3 49 1.64% H6H 48 1.6% IFR 42 1.4% TRI/TRII 40 1.34% CYP71 40 1.34% CODM/T6ODM 39 1.3% CYP90D1 36 1.2% BR6OX2/CYP85A2 34 1.14% SGD 31 1.04% LAC 30 1.0% CSE 29 0.97% GS 28 0.94% T16H 28 0.94% COMT 28 0.94% PYKS 27 0.9% G8O/G8H 25 0.84% 8HGO 22 0.73% SLS 21 0.7% BR6OX1/CYP85A1 21 0.7% NCS 20 0.67% CCR 20 0.67% DFR 19 0.63% IO 18 0.6% ANR 18 0.6% 16OMT 16 0.53% F3'5'H/CYP75A 15 0.5% PAL 15 0.5% RAS 15 0.5% ROT3/CYP90C1 15 0.5% CYP51G1 15 0.5% BBE 14 0.47% CCoAOMT 14 0.47% PMT 13 0.43% FNS 13 0.43% HCT 12 0.4% CNMT 11 0.37% F5H/CYP84A 11 0.37% COR 10 0.33% CHS 9 0.3% SQE 9 0.3% MPO 8 0.27% CYP719 8 0.27% ANS/LDOX 8 0.27% 7DLH 7 0.23% CPD/CYP90A1 7 0.23% CPR 6 0.2% DET2 6 0.2% MVD 6 0.2% TDC 5 0.17% TAT 5 0.17% GGPPS 5 0.17% FPPS 5 0.17% CYP80B1 4 0.13% ADC 4 0.13% LAMT 4 0.13% HPPR 4 0.13% SQS/FDFT1 4 0.13% MVK 4 0.13% AACT 4 0.13% PMK 4 0.13% HMGR 4 0.13% CHI 3 0.1% SMO1/SMO2 3 0.1% IDI 3 0.1% DXS 3 0.1% ISY 2 0.07% XMT_MXMT_DXMT 2 0.07% TYDC_DDC 2 0.07% FLS 2 0.07% HDR/IspH 2 0.07% CMK/IspE 2 0.07% MDS/IspF 2 0.07% CYP80F1 1 0.03% DWF5 1 0.03% HYD1 1 0.03% DWF1 1 0.03% FK 1 0.03% CPI1 1 0.03% DWF7 1 0.03% MCT/IspD 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 384 19 BAHD (129) View species results
Alkaloid pathway 279 18 7DLGT (47) View species results
Phenylpropanoid pathway 258 13 POD (93) View species results
Flavonoid pathway 173 13 UFGT (87) View species results
Steroid pathway 87 11 CAS (40) View species results
Rosmarinic acid pathway 81 7 4CL (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1055 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 191 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
cymbidium_goeringii_gene_5541 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
cymbidium_goeringii_gene_6239 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
cymbidium_goeringii_gene_6561 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
cymbidium_goeringii_gene_6665 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
cymbidium_goeringii_gene_749 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
cymbidium_goeringii_gene_750 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
cymbidium_goeringii_gene_751 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
cymbidium_goeringii_gene_8004 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
cymbidium_goeringii_gene_8020 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
cymbidium_goeringii_gene_8123 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
cymbidium_goeringii_gene_8573 Phenylpropanoid POD low borderline POD__00002__sp_A5H8G4_PER1_MAIZE
cymbidium_goeringii_gene_8694 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
cymbidium_goeringii_gene_8714 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
cymbidium_goeringii_gene_9181 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
cymbidium_goeringii_gene_9538 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
cymbidium_goeringii_gene_9932 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH