PlantSME Plant secondary metabolism enzyme database

Cyperus esculentus (cyperus_esculentus)

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Imported from atlas release summary for Cyperus esculentus.

1792
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.33% Phenylpropanoid pathway 24.33% Alkaloid pathway 21.76% Flavonoid pathway 15.57% Rosmarinic acid pathway 8.15% Steroid pathway 4.85%
Family Distribution
C4H 6.67% C3'H/CYP98A 6.56% BAHD 5.12% POD 4.32% T3O 4.28% UGT 4.14% 7DLGT 3.88% UFGT 3.88%
Other Families 61.15%
More Families (95)
IFS 163 3.83% CYP76 142 3.34% DWF4/CYP90B1 117 2.75% 4CL 114 2.68% F3'H/CYP75B 101 2.37% CYP71 93 2.19% F3H 89 2.09% CAD 89 2.09% BR6OX2/CYP85A2 81 1.9% NMT 68 1.6% PYKS 65 1.53% COMT 62 1.46% CAS 61 1.43% RAS 59 1.39% HCT 58 1.36% STR 54 1.27% 16OMT 52 1.22% TPS 52 1.22% GES 50 1.18% CHS 46 1.08% CODM/T6ODM 44 1.03% LAC 44 1.03% IFR 43 1.01% PMT 42 0.99% SMT1/SMT2/SMT3 41 0.96% H6H 40 0.94% GS 39 0.92% TRI/TRII 38 0.89% CSE 38 0.89% SLS 33 0.78% CYP51G1 32 0.75% T16H 31 0.73% SGD 30 0.71% ANR 29 0.68% CYP90D1 24 0.56% IO 23 0.54% COR 23 0.54% G8O/G8H 21 0.49% CPD/CYP90A1 21 0.49% F3'5'H/CYP75A 20 0.47% FNS 19 0.45% NCS 18 0.42% F5H/CYP84A 18 0.42% CCR 17 0.4% 8HGO 16 0.38% PAL 15 0.35% CHI 12 0.28% CNMT 11 0.26% 7DLH 11 0.26% DFR 10 0.24% BBE 9 0.21% TYDC_DDC 9 0.21% LAMT 9 0.21% TAT 9 0.21% BR6OX1/CYP85A1 9 0.21% CCoAOMT 8 0.19% CPR 8 0.19% ANS/LDOX 7 0.16% ROT3/CYP90C1 7 0.16% DET2 6 0.14% SMO1/SMO2 6 0.14% FPPS 6 0.14% GGPPS 6 0.14% AACT 6 0.14% 6OMT_4OMT_SOMT 5 0.12% CYP80B1 5 0.12% HPPR 5 0.12% MPO 4 0.09% SQS/FDFT1 4 0.09% DWF1 4 0.09% MVD 4 0.09% HMGR 4 0.09% ISY 3 0.07% SQE 3 0.07% CPI1 3 0.07% MVK 3 0.07% PMK 3 0.07% MCT/IspD 3 0.07% CYP719 2 0.05% TDC 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% HDR/IspH 2 0.05% DXS 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% FLS 1 0.02% DWF5 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF7 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02% HMGS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 454 19 UGT (164) View species results
Phenylpropanoid pathway 436 11 POD (182) View species results
Alkaloid pathway 390 21 7DLGT (81) View species results
Flavonoid pathway 279 8 UFGT (161) View species results
Rosmarinic acid pathway 146 7 C4H (62) View species results
Steroid pathway 87 13 CAS (39) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1699 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 335 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
cyperus_esculentus_CESC_21092 Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
cyperus_esculentus_CESC_21147 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
cyperus_esculentus_CESC_21153 Terpenoid BAHD medium pass BAHD__00040__sp_Q41745_LPAT_MAIZE
cyperus_esculentus_CESC_21455 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
cyperus_esculentus_CESC_22002 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
cyperus_esculentus_CESC_22004 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
cyperus_esculentus_CESC_22206 Terpenoid BAHD low borderline BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
cyperus_esculentus_CESC_22210 Terpenoid BAHD low borderline BAHD__00028__sp_O80467_SDT_ARATH
cyperus_esculentus_CESC_22276 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
cyperus_esculentus_CESC_22277 Terpenoid BAHD medium pass BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
cyperus_esculentus_CESC_22278 Terpenoid BAHD low borderline BAHD__00002__sp_A0A068BIF1_AT9_ACTER
cyperus_esculentus_CESC_22749 Terpenoid BAHD low borderline BAHD__00087__sp_Q9M3B1_WSD6_ARATH
cyperus_esculentus_CESC_22925 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
cyperus_esculentus_CESC_22926 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
cyperus_esculentus_CESC_22927 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
cyperus_esculentus_CESC_23045 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
cyperus_esculentus_CESC_23168 Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH
cyperus_esculentus_CESC_23540 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH