Cyperus esculentus (cyperus_esculentus)
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Imported from atlas release summary for Cyperus esculentus.
1792
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1792
Candidate Genes
C4H
6.67%
C3'H/CYP98A
6.56%
BAHD
5.12%
POD
4.32%
T3O
4.28%
UGT
4.14%
7DLGT
3.88%
UFGT
3.88%
Other Families
61.15%
More Families (95)
IFS
163
3.83%
CYP76
142
3.34%
DWF4/CYP90B1
117
2.75%
4CL
114
2.68%
F3'H/CYP75B
101
2.37%
CYP71
93
2.19%
F3H
89
2.09%
CAD
89
2.09%
BR6OX2/CYP85A2
81
1.9%
NMT
68
1.6%
PYKS
65
1.53%
COMT
62
1.46%
CAS
61
1.43%
RAS
59
1.39%
HCT
58
1.36%
STR
54
1.27%
16OMT
52
1.22%
TPS
52
1.22%
GES
50
1.18%
CHS
46
1.08%
CODM/T6ODM
44
1.03%
LAC
44
1.03%
IFR
43
1.01%
PMT
42
0.99%
SMT1/SMT2/SMT3
41
0.96%
H6H
40
0.94%
GS
39
0.92%
TRI/TRII
38
0.89%
CSE
38
0.89%
SLS
33
0.78%
CYP51G1
32
0.75%
T16H
31
0.73%
SGD
30
0.71%
ANR
29
0.68%
CYP90D1
24
0.56%
IO
23
0.54%
COR
23
0.54%
G8O/G8H
21
0.49%
CPD/CYP90A1
21
0.49%
F3'5'H/CYP75A
20
0.47%
FNS
19
0.45%
NCS
18
0.42%
F5H/CYP84A
18
0.42%
CCR
17
0.4%
8HGO
16
0.38%
PAL
15
0.35%
CHI
12
0.28%
CNMT
11
0.26%
7DLH
11
0.26%
DFR
10
0.24%
BBE
9
0.21%
TYDC_DDC
9
0.21%
LAMT
9
0.21%
TAT
9
0.21%
BR6OX1/CYP85A1
9
0.21%
CCoAOMT
8
0.19%
CPR
8
0.19%
ANS/LDOX
7
0.16%
ROT3/CYP90C1
7
0.16%
DET2
6
0.14%
SMO1/SMO2
6
0.14%
FPPS
6
0.14%
GGPPS
6
0.14%
AACT
6
0.14%
6OMT_4OMT_SOMT
5
0.12%
CYP80B1
5
0.12%
HPPR
5
0.12%
MPO
4
0.09%
SQS/FDFT1
4
0.09%
DWF1
4
0.09%
MVD
4
0.09%
HMGR
4
0.09%
ISY
3
0.07%
SQE
3
0.07%
CPI1
3
0.07%
MVK
3
0.07%
PMK
3
0.07%
MCT/IspD
3
0.07%
CYP719
2
0.05%
TDC
2
0.05%
ADC
2
0.05%
XMT_MXMT_DXMT
2
0.05%
HDR/IspH
2
0.05%
DXS
2
0.05%
IDI
2
0.05%
MDS/IspF
2
0.05%
FLS
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
DWF7
1
0.02%
DXR
1
0.02%
HDS/IspG
1
0.02%
HMGS
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 454 | 19 | UGT (164) | View species results |
| Phenylpropanoid pathway | 436 | 11 | POD (182) | View species results |
| Alkaloid pathway | 390 | 21 | 7DLGT (81) | View species results |
| Flavonoid pathway | 279 | 8 | UFGT (161) | View species results |
| Rosmarinic acid pathway | 146 | 7 | C4H (62) | View species results |
| Steroid pathway | 87 | 13 | CAS (39) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1699 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 335 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| cyperus_esculentus_CESC_00490 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_00491 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_00492 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_00757 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_00759 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_02154 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_02158 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_02160 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_02161 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_02164 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_02721 | Alkaloid | PMT | medium | borderline |
| cyperus_esculentus_CESC_03001 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_03002 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_03230 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_06150 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_06155 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_07053 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_07595 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_07598 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_07599 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_07600 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_07608 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_10094 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_10995 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_12409 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_12534 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_12792 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_13823 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_14770 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_16086 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_17208 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_17211 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_18704 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_18975 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_20681 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_21519 | Alkaloid | PMT | medium | borderline |
| cyperus_esculentus_CESC_22206 | Alkaloid | PMT | low | borderline |
| cyperus_esculentus_CESC_22277 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_22872 | Alkaloid | PMT | medium | borderline |
| cyperus_esculentus_CESC_22925 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_22926 | Alkaloid | PMT | medium | pass |
| cyperus_esculentus_CESC_22927 | Alkaloid | PMT | medium | pass |