PlantSME Plant secondary metabolism enzyme database

Cyperus esculentus (cyperus_esculentus)

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Imported from atlas release summary for Cyperus esculentus.

1792
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.33% Phenylpropanoid pathway 24.33% Alkaloid pathway 21.76% Flavonoid pathway 15.57% Rosmarinic acid pathway 8.15% Steroid pathway 4.85%
Family Distribution
C4H 6.67% C3'H/CYP98A 6.56% BAHD 5.12% POD 4.32% T3O 4.28% UGT 4.14% 7DLGT 3.88% UFGT 3.88%
Other Families 61.15%
More Families (95)
IFS 163 3.83% CYP76 142 3.34% DWF4/CYP90B1 117 2.75% 4CL 114 2.68% F3'H/CYP75B 101 2.37% CYP71 93 2.19% F3H 89 2.09% CAD 89 2.09% BR6OX2/CYP85A2 81 1.9% NMT 68 1.6% PYKS 65 1.53% COMT 62 1.46% CAS 61 1.43% RAS 59 1.39% HCT 58 1.36% STR 54 1.27% 16OMT 52 1.22% TPS 52 1.22% GES 50 1.18% CHS 46 1.08% CODM/T6ODM 44 1.03% LAC 44 1.03% IFR 43 1.01% PMT 42 0.99% SMT1/SMT2/SMT3 41 0.96% H6H 40 0.94% GS 39 0.92% TRI/TRII 38 0.89% CSE 38 0.89% SLS 33 0.78% CYP51G1 32 0.75% T16H 31 0.73% SGD 30 0.71% ANR 29 0.68% CYP90D1 24 0.56% IO 23 0.54% COR 23 0.54% G8O/G8H 21 0.49% CPD/CYP90A1 21 0.49% F3'5'H/CYP75A 20 0.47% FNS 19 0.45% NCS 18 0.42% F5H/CYP84A 18 0.42% CCR 17 0.4% 8HGO 16 0.38% PAL 15 0.35% CHI 12 0.28% CNMT 11 0.26% 7DLH 11 0.26% DFR 10 0.24% BBE 9 0.21% TYDC_DDC 9 0.21% LAMT 9 0.21% TAT 9 0.21% BR6OX1/CYP85A1 9 0.21% CCoAOMT 8 0.19% CPR 8 0.19% ANS/LDOX 7 0.16% ROT3/CYP90C1 7 0.16% DET2 6 0.14% SMO1/SMO2 6 0.14% FPPS 6 0.14% GGPPS 6 0.14% AACT 6 0.14% 6OMT_4OMT_SOMT 5 0.12% CYP80B1 5 0.12% HPPR 5 0.12% MPO 4 0.09% SQS/FDFT1 4 0.09% DWF1 4 0.09% MVD 4 0.09% HMGR 4 0.09% ISY 3 0.07% SQE 3 0.07% CPI1 3 0.07% MVK 3 0.07% PMK 3 0.07% MCT/IspD 3 0.07% CYP719 2 0.05% TDC 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% HDR/IspH 2 0.05% DXS 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% FLS 1 0.02% DWF5 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF7 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02% HMGS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 454 19 UGT (164) View species results
Phenylpropanoid pathway 436 11 POD (182) View species results
Alkaloid pathway 390 21 7DLGT (81) View species results
Flavonoid pathway 279 8 UFGT (161) View species results
Rosmarinic acid pathway 146 7 C4H (62) View species results
Steroid pathway 87 13 CAS (39) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1699 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 335 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
cyperus_esculentus_CESC_05095 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
cyperus_esculentus_CESC_10139 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
cyperus_esculentus_CESC_13583 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
cyperus_esculentus_CESC_15121 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
cyperus_esculentus_CESC_15122 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
cyperus_esculentus_CESC_05095 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
cyperus_esculentus_CESC_10139 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
cyperus_esculentus_CESC_13583 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
cyperus_esculentus_CESC_15121 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
cyperus_esculentus_CESC_15122 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
cyperus_esculentus_CESC_05095 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
cyperus_esculentus_CESC_10139 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
cyperus_esculentus_CESC_13583 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
cyperus_esculentus_CESC_15121 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
cyperus_esculentus_CESC_15122 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR