PlantSME Plant secondary metabolism enzyme database

Cyperus esculentus (cyperus_esculentus)

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Imported from atlas release summary for Cyperus esculentus.

1792
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.33% Phenylpropanoid pathway 24.33% Alkaloid pathway 21.76% Flavonoid pathway 15.57% Rosmarinic acid pathway 8.15% Steroid pathway 4.85%
Family Distribution
C4H 6.67% C3'H/CYP98A 6.56% BAHD 5.12% POD 4.32% T3O 4.28% UGT 4.14% 7DLGT 3.88% UFGT 3.88%
Other Families 61.15%
More Families (95)
IFS 163 3.83% CYP76 142 3.34% DWF4/CYP90B1 117 2.75% 4CL 114 2.68% F3'H/CYP75B 101 2.37% CYP71 93 2.19% F3H 89 2.09% CAD 89 2.09% BR6OX2/CYP85A2 81 1.9% NMT 68 1.6% PYKS 65 1.53% COMT 62 1.46% CAS 61 1.43% RAS 59 1.39% HCT 58 1.36% STR 54 1.27% 16OMT 52 1.22% TPS 52 1.22% GES 50 1.18% CHS 46 1.08% CODM/T6ODM 44 1.03% LAC 44 1.03% IFR 43 1.01% PMT 42 0.99% SMT1/SMT2/SMT3 41 0.96% H6H 40 0.94% GS 39 0.92% TRI/TRII 38 0.89% CSE 38 0.89% SLS 33 0.78% CYP51G1 32 0.75% T16H 31 0.73% SGD 30 0.71% ANR 29 0.68% CYP90D1 24 0.56% IO 23 0.54% COR 23 0.54% G8O/G8H 21 0.49% CPD/CYP90A1 21 0.49% F3'5'H/CYP75A 20 0.47% FNS 19 0.45% NCS 18 0.42% F5H/CYP84A 18 0.42% CCR 17 0.4% 8HGO 16 0.38% PAL 15 0.35% CHI 12 0.28% CNMT 11 0.26% 7DLH 11 0.26% DFR 10 0.24% BBE 9 0.21% TYDC_DDC 9 0.21% LAMT 9 0.21% TAT 9 0.21% BR6OX1/CYP85A1 9 0.21% CCoAOMT 8 0.19% CPR 8 0.19% ANS/LDOX 7 0.16% ROT3/CYP90C1 7 0.16% DET2 6 0.14% SMO1/SMO2 6 0.14% FPPS 6 0.14% GGPPS 6 0.14% AACT 6 0.14% 6OMT_4OMT_SOMT 5 0.12% CYP80B1 5 0.12% HPPR 5 0.12% MPO 4 0.09% SQS/FDFT1 4 0.09% DWF1 4 0.09% MVD 4 0.09% HMGR 4 0.09% ISY 3 0.07% SQE 3 0.07% CPI1 3 0.07% MVK 3 0.07% PMK 3 0.07% MCT/IspD 3 0.07% CYP719 2 0.05% TDC 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% HDR/IspH 2 0.05% DXS 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% FLS 1 0.02% DWF5 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF7 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02% HMGS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 454 19 UGT (164) View species results
Phenylpropanoid pathway 436 11 POD (182) View species results
Alkaloid pathway 390 21 7DLGT (81) View species results
Flavonoid pathway 279 8 UFGT (161) View species results
Rosmarinic acid pathway 146 7 C4H (62) View species results
Steroid pathway 87 13 CAS (39) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1699 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 335 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
cyperus_esculentus_CESC_20062 Steroid CAS medium pass CAS__00006__sp_Q2XPU6_CAS1_RICCO
cyperus_esculentus_CESC_20760 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
cyperus_esculentus_CESC_20761 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
cyperus_esculentus_CESC_20763 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
cyperus_esculentus_CESC_20764 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
cyperus_esculentus_CESC_20931 Steroid CAS medium pass CAS__00009__sp_Q6Z2X6_CAS_ORYSJ
cyperus_esculentus_CESC_21125 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
cyperus_esculentus_CESC_21156 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
cyperus_esculentus_CESC_21254 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
cyperus_esculentus_CESC_22251 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
cyperus_esculentus_CESC_22253 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA