PlantSME Plant secondary metabolism enzyme database

Cyperus esculentus (cyperus_esculentus)

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Imported from atlas release summary for Cyperus esculentus.

1792
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 25.33% Phenylpropanoid pathway 24.33% Alkaloid pathway 21.76% Flavonoid pathway 15.57% Rosmarinic acid pathway 8.15% Steroid pathway 4.85%
Family Distribution
C4H 6.67% C3'H/CYP98A 6.56% BAHD 5.12% POD 4.32% T3O 4.28% UGT 4.14% 7DLGT 3.88% UFGT 3.88%
Other Families 61.15%
More Families (95)
IFS 163 3.83% CYP76 142 3.34% DWF4/CYP90B1 117 2.75% 4CL 114 2.68% F3'H/CYP75B 101 2.37% CYP71 93 2.19% F3H 89 2.09% CAD 89 2.09% BR6OX2/CYP85A2 81 1.9% NMT 68 1.6% PYKS 65 1.53% COMT 62 1.46% CAS 61 1.43% RAS 59 1.39% HCT 58 1.36% STR 54 1.27% 16OMT 52 1.22% TPS 52 1.22% GES 50 1.18% CHS 46 1.08% CODM/T6ODM 44 1.03% LAC 44 1.03% IFR 43 1.01% PMT 42 0.99% SMT1/SMT2/SMT3 41 0.96% H6H 40 0.94% GS 39 0.92% TRI/TRII 38 0.89% CSE 38 0.89% SLS 33 0.78% CYP51G1 32 0.75% T16H 31 0.73% SGD 30 0.71% ANR 29 0.68% CYP90D1 24 0.56% IO 23 0.54% COR 23 0.54% G8O/G8H 21 0.49% CPD/CYP90A1 21 0.49% F3'5'H/CYP75A 20 0.47% FNS 19 0.45% NCS 18 0.42% F5H/CYP84A 18 0.42% CCR 17 0.4% 8HGO 16 0.38% PAL 15 0.35% CHI 12 0.28% CNMT 11 0.26% 7DLH 11 0.26% DFR 10 0.24% BBE 9 0.21% TYDC_DDC 9 0.21% LAMT 9 0.21% TAT 9 0.21% BR6OX1/CYP85A1 9 0.21% CCoAOMT 8 0.19% CPR 8 0.19% ANS/LDOX 7 0.16% ROT3/CYP90C1 7 0.16% DET2 6 0.14% SMO1/SMO2 6 0.14% FPPS 6 0.14% GGPPS 6 0.14% AACT 6 0.14% 6OMT_4OMT_SOMT 5 0.12% CYP80B1 5 0.12% HPPR 5 0.12% MPO 4 0.09% SQS/FDFT1 4 0.09% DWF1 4 0.09% MVD 4 0.09% HMGR 4 0.09% ISY 3 0.07% SQE 3 0.07% CPI1 3 0.07% MVK 3 0.07% PMK 3 0.07% MCT/IspD 3 0.07% CYP719 2 0.05% TDC 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% HDR/IspH 2 0.05% DXS 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% FLS 1 0.02% DWF5 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF7 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02% HMGS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 454 19 UGT (164) View species results
Phenylpropanoid pathway 436 11 POD (182) View species results
Alkaloid pathway 390 21 7DLGT (81) View species results
Flavonoid pathway 279 8 UFGT (161) View species results
Rosmarinic acid pathway 146 7 C4H (62) View species results
Steroid pathway 87 13 CAS (39) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1699 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 335 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
cyperus_esculentus_CESC_19476 Alkaloid NMT low borderline NMT__00033__sp_Q5QD03_SUVH3_CHLRE
cyperus_esculentus_CESC_19770 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
cyperus_esculentus_CESC_19907 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
cyperus_esculentus_CESC_19978 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
cyperus_esculentus_CESC_20308 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
cyperus_esculentus_CESC_20352 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
cyperus_esculentus_CESC_20934 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
cyperus_esculentus_CESC_20965 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
cyperus_esculentus_CESC_20977 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
cyperus_esculentus_CESC_21228 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
cyperus_esculentus_CESC_21340 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
cyperus_esculentus_CESC_21381 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
cyperus_esculentus_CESC_21650 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
cyperus_esculentus_CESC_21651 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
cyperus_esculentus_CESC_21789 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
cyperus_esculentus_CESC_22547 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
cyperus_esculentus_CESC_22643 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
cyperus_esculentus_CESC_23095 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH