PlantSME Plant secondary metabolism enzyme database

Diospyros oleifera (diospyros_oleifera)

Imported from atlas release summary for Diospyros oleifera.

1485
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.02% Alkaloid pathway 22.76% Phenylpropanoid pathway 21.75% Flavonoid pathway 13.54% Rosmarinic acid pathway 8.01% Steroid pathway 4.92%
Family Distribution
C4H 6.14% C3'H/CYP98A 5.42% BAHD 5.03% UGT 4.45% 7DLGT 4.01% UFGT 3.93% POD 3.71% IFS 3.54%
Other Families 63.76%
More Families (95)
CYP76 126 3.49% T3O 115 3.18% 4CL 108 2.99% F3H 104 2.88% CODM/T6ODM 78 2.16% F3'H/CYP75B 76 2.1% STR 74 2.05% BR6OX2/CYP85A2 72 1.99% NMT 67 1.85% CAD 66 1.83% TPS 66 1.83% DWF4/CYP90B1 65 1.8% COMT 54 1.49% GES 52 1.44% 16OMT 49 1.36% TRI/TRII 48 1.33% CAS 47 1.3% CSE 46 1.27% H6H 42 1.16% LAC 39 1.08% PYKS 38 1.05% SMT1/SMT2/SMT3 38 1.05% CYP71 36 1.0% SGD 35 0.97% IFR 34 0.94% IO 33 0.91% CYP90D1 32 0.89% BBE 28 0.77% DFR 27 0.75% GS 26 0.72% SLS 25 0.69% ANR 25 0.69% HCT 25 0.69% NCS 23 0.64% RAS 23 0.64% T16H 21 0.58% CCR 20 0.55% G8O/G8H 18 0.5% PMT 18 0.5% 8HGO 17 0.47% ANS/LDOX 17 0.47% F5H/CYP84A 17 0.47% 7DLH 16 0.44% TAT 16 0.44% BR6OX1/CYP85A1 16 0.44% CYP51G1 16 0.44% PAL 15 0.41% F3'5'H/CYP75A 14 0.39% CHS 14 0.39% CPD/CYP90A1 14 0.39% COR 13 0.36% CPR 12 0.33% AACT 12 0.33% CCoAOMT 11 0.3% MPO 10 0.28% ROT3/CYP90C1 10 0.28% FNS 9 0.25% TYDC_DDC 8 0.22% GGPPS 8 0.22% FPPS 8 0.22% CYP80B1 7 0.19% CNMT 7 0.19% HPPR 7 0.19% MVK 6 0.17% HMGR 6 0.17% TDC 5 0.14% CYP719 5 0.14% SQS/FDFT1 5 0.14% SQE 5 0.14% DXS 5 0.14% ISY 4 0.11% LAMT 4 0.11% XMT_MXMT_DXMT 4 0.11% DET2 4 0.11% HMGS 4 0.11% 6OMT_4OMT_SOMT 3 0.08% CHI 3 0.08% SMO1/SMO2 3 0.08% MVD 3 0.08% DXR 3 0.08% ADC 2 0.06% FLS 2 0.06% CPI1 2 0.06% MCT/IspD 2 0.06% MDS/IspF 2 0.06% CYP80F1 1 0.03% DWF5 1 0.03% HYD1 1 0.03% FK 1 0.03% DWF1 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% IDI 1 0.03% PMK 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 431 19 UGT (152) View species results
Alkaloid pathway 338 22 7DLGT (48) View species results
Phenylpropanoid pathway 323 12 POD (125) View species results
Flavonoid pathway 201 12 UFGT (131) View species results
Rosmarinic acid pathway 119 7 C4H (61) View species results
Steroid pathway 73 10 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1281 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 230 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGR
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Gene Pathway Family Confidence Status Best Target
Dole04G0012530.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Dole05G0008720.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Dole05G0008730.1 Terpenoid HMGR medium pass HMGR__00001__sp_A0A0A1C3I2_HMGR1_PANGI
Dole12G0020130.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Dole15G0019580.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Doleoriginal_scaffold_1610004670.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI