PlantSME Plant secondary metabolism enzyme database

Diphyscium fulvifolium (diphyscium_fulvifolium)

Imported from atlas release summary for Diphyscium fulvifolium.

511
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.79% Terpenoid pathway 23.68% Alkaloid pathway 21.14% Rosmarinic acid pathway 10.76% Flavonoid pathway 10.18% Steroid pathway 6.46%
Family Distribution
BAHD 6.68% 4CL 6.3% C4H 5.63% C3'H/CYP98A 5.4% POD 5.18% NMT 4.35% CYP76 4.35% STR 2.85%
Other Families 59.26%
More Families (96)
IFS 38 2.85% F3H 30 2.25% IFR 30 2.25% T3O 29 2.18% DWF4/CYP90B1 27 2.03% LAC 25 1.88% GS 24 1.8% H6H 24 1.8% PYKS 24 1.8% BR6OX2/CYP85A2 24 1.8% F3'H/CYP75B 21 1.58% SMT1/SMT2/SMT3 20 1.5% UGT 18 1.35% G8O/G8H 17 1.28% CODM/T6ODM 17 1.28% 7DLGT 17 1.28% CAD 17 1.28% UFGT 16 1.2% CYP71 16 1.2% CHS 14 1.05% PAL 14 1.05% TRI/TRII 13 0.98% SGD 13 0.98% HCT 13 0.98% T16H 12 0.9% F3'5'H/CYP75A 12 0.9% RAS 12 0.9% 8HGO 11 0.83% IO 10 0.75% COMT 10 0.75% CAS 10 0.75% CSE 9 0.68% CNMT 8 0.6% PMT 8 0.6% ANS/LDOX 8 0.6% CYP90D1 8 0.6% ANR 7 0.53% CPD/CYP90A1 7 0.53% MPO 6 0.45% SLS 6 0.45% DFR 6 0.45% CCR 6 0.45% NCS 5 0.38% LAMT 5 0.38% COR 5 0.38% FNS 5 0.38% SQS/FDFT1 5 0.38% 7DLH 4 0.3% CYP80F1 4 0.3% 16OMT 4 0.3% BR6OX1/CYP85A1 4 0.3% DET2 4 0.3% FPPS 4 0.3% AACT 4 0.3% CYP80B1 3 0.23% ISY 3 0.23% CYP719 3 0.23% TDC 3 0.23% FLS 3 0.23% CHI 3 0.23% F5H/CYP84A 3 0.23% TAT 3 0.23% CPR 3 0.23% DWF5 3 0.23% ROT3/CYP90C1 3 0.23% MVD 3 0.23% DXS 3 0.23% GGPPS 3 0.23% BBE 2 0.15% ADC 2 0.15% CCoAOMT 2 0.15% CYP51G1 2 0.15% HYD1 2 0.15% SMO1/SMO2 2 0.15% DXR 2 0.15% MVK 2 0.15% PMK 2 0.15% GPPS 2 0.15% GES 1 0.08% 6OMT_4OMT_SOMT 1 0.08% TYDC_DDC 1 0.08% HPPR 1 0.08% DWF7 1 0.08% DWF1 1 0.08% SQE 1 0.08% CPI1 1 0.08% FK 1 0.08% TPS 1 0.08% HMGS 1 0.08% HDR/IspH 1 0.08% MDS/IspF 1 0.08% HDS/IspG 1 0.08% MCT/IspD 1 0.08% CMK/IspE 1 0.08% IDI 1 0.08% HMGR 1 0.08%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 142 10 POD (62) View species results
Terpenoid pathway 121 19 BAHD (59) View species results
Alkaloid pathway 108 17 NMT (19) View species results
Rosmarinic acid pathway 55 7 C4H (23) View species results
Flavonoid pathway 52 9 4CL (14) View species results
Steroid pathway 33 11 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 114 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
DIPfulscaffold_20039710 Alkaloid 7DLGT low borderline
DIPfulscaffold_20048290 Alkaloid 7DLGT medium pass
DIPfulscaffold_20050880 Alkaloid 7DLGT low borderline
DIPfulscaffold_30060730 Alkaloid 7DLGT medium pass
DIPfulscaffold_40073150 Alkaloid 7DLGT low borderline
DIPfulscaffold_50110400 Alkaloid 7DLGT low borderline
DIPfulscaffold_50114010 Alkaloid 7DLGT medium pass
DIPfulscaffold_50116810 Alkaloid 7DLGT medium pass
DIPfulscaffold_50117700 Alkaloid 7DLGT low borderline
DIPfulscaffold_60124080 Alkaloid 7DLGT medium pass
DIPfulscaffold_60130110 Alkaloid 7DLGT low borderline
DIPfulscaffold_60133660 Alkaloid 7DLGT medium pass
DIPfulscaffold_70141840 Alkaloid 7DLGT low borderline
DIPfulscaffold_70142900 Alkaloid 7DLGT low borderline
DIPfulscaffold_80169420 Alkaloid 7DLGT low borderline
DIPfulscaffold_80177730 Alkaloid 7DLGT low borderline
DIPfulscaffold_80187670 Alkaloid 7DLGT medium pass