PlantSME Plant secondary metabolism enzyme database

Diphyscium fulvifolium (diphyscium_fulvifolium)

Imported from atlas release summary for Diphyscium fulvifolium.

511
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.79% Terpenoid pathway 23.68% Alkaloid pathway 21.14% Rosmarinic acid pathway 10.76% Flavonoid pathway 10.18% Steroid pathway 6.46%
Family Distribution
BAHD 6.68% 4CL 6.3% C4H 5.63% C3'H/CYP98A 5.4% POD 5.18% NMT 4.35% CYP76 4.35% STR 2.85%
Other Families 59.26%
More Families (96)
IFS 38 2.85% F3H 30 2.25% IFR 30 2.25% T3O 29 2.18% DWF4/CYP90B1 27 2.03% LAC 25 1.88% GS 24 1.8% H6H 24 1.8% PYKS 24 1.8% BR6OX2/CYP85A2 24 1.8% F3'H/CYP75B 21 1.58% SMT1/SMT2/SMT3 20 1.5% UGT 18 1.35% G8O/G8H 17 1.28% CODM/T6ODM 17 1.28% 7DLGT 17 1.28% CAD 17 1.28% UFGT 16 1.2% CYP71 16 1.2% CHS 14 1.05% PAL 14 1.05% TRI/TRII 13 0.98% SGD 13 0.98% HCT 13 0.98% T16H 12 0.9% F3'5'H/CYP75A 12 0.9% RAS 12 0.9% 8HGO 11 0.83% IO 10 0.75% COMT 10 0.75% CAS 10 0.75% CSE 9 0.68% CNMT 8 0.6% PMT 8 0.6% ANS/LDOX 8 0.6% CYP90D1 8 0.6% ANR 7 0.53% CPD/CYP90A1 7 0.53% MPO 6 0.45% SLS 6 0.45% DFR 6 0.45% CCR 6 0.45% NCS 5 0.38% LAMT 5 0.38% COR 5 0.38% FNS 5 0.38% SQS/FDFT1 5 0.38% 7DLH 4 0.3% CYP80F1 4 0.3% 16OMT 4 0.3% BR6OX1/CYP85A1 4 0.3% DET2 4 0.3% FPPS 4 0.3% AACT 4 0.3% CYP80B1 3 0.23% ISY 3 0.23% CYP719 3 0.23% TDC 3 0.23% FLS 3 0.23% CHI 3 0.23% F5H/CYP84A 3 0.23% TAT 3 0.23% CPR 3 0.23% DWF5 3 0.23% ROT3/CYP90C1 3 0.23% MVD 3 0.23% DXS 3 0.23% GGPPS 3 0.23% BBE 2 0.15% ADC 2 0.15% CCoAOMT 2 0.15% CYP51G1 2 0.15% HYD1 2 0.15% SMO1/SMO2 2 0.15% DXR 2 0.15% MVK 2 0.15% PMK 2 0.15% GPPS 2 0.15% GES 1 0.08% 6OMT_4OMT_SOMT 1 0.08% TYDC_DDC 1 0.08% HPPR 1 0.08% DWF7 1 0.08% DWF1 1 0.08% SQE 1 0.08% CPI1 1 0.08% FK 1 0.08% TPS 1 0.08% HMGS 1 0.08% HDR/IspH 1 0.08% MDS/IspF 1 0.08% HDS/IspG 1 0.08% MCT/IspD 1 0.08% CMK/IspE 1 0.08% IDI 1 0.08% HMGR 1 0.08%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 142 10 POD (62) View species results
Terpenoid pathway 121 19 BAHD (59) View species results
Alkaloid pathway 108 17 NMT (19) View species results
Rosmarinic acid pathway 55 7 C4H (23) View species results
Flavonoid pathway 52 9 4CL (14) View species results
Steroid pathway 33 11 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 114 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
DIPfulscaffold_80164210 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
DIPfulscaffold_80164440 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
DIPfulscaffold_80164530 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
DIPfulscaffold_80170290 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
DIPfulscaffold_80173360 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
DIPfulscaffold_80176800 Alkaloid NMT low borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
DIPfulscaffold_80185000 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH
DIPfulscaffold_80187880 Alkaloid NMT low borderline NMT__00039__sp_Q84W92_ANM13_ARATH