PlantSME Plant secondary metabolism enzyme database

Eucommia ulmoides (eucommia_ulmoides)

Imported from atlas release summary for Eucommia ulmoides.

1354
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 34.56% Alkaloid pathway 23.56% Phenylpropanoid pathway 20.38% Flavonoid pathway 8.57% Rosmarinic acid pathway 7.98% Steroid pathway 4.95%
Family Distribution
BAHD 6.64% C4H 5.9% UGT 5.83% 4CL 4.27% C3'H/CYP98A 3.97% POD 3.83% IFS 3.8% CYP76 3.32%
Other Families 62.44%
More Families (96)
7DLGT 94 3.19% T3O 76 2.58% F3H 75 2.54% STR 73 2.47% DWF4/CYP90B1 69 2.34% NMT 64 2.17% SGD 56 1.9% H6H 55 1.86% UFGT 55 1.86% TPS 51 1.73% CAD 47 1.59% LAC 44 1.49% CODM/T6ODM 43 1.46% F3'H/CYP75B 43 1.46% GES 40 1.36% IFR 40 1.36% GS 38 1.29% CAS 37 1.25% CYP71 35 1.19% G8O/G8H 34 1.15% SMT1/SMT2/SMT3 33 1.12% HCT 31 1.05% RAS 26 0.88% TRI/TRII 25 0.85% F5H/CYP84A 24 0.81% TAT 24 0.81% BR6OX2/CYP85A2 23 0.78% IO 22 0.75% PYKS 22 0.75% T16H 22 0.75% FNS 22 0.75% COMT 22 0.75% CSE 22 0.75% NCS 21 0.71% PMT 21 0.71% ANS/LDOX 21 0.71% PAL 21 0.71% SLS 19 0.64% CPD/CYP90A1 19 0.64% 16OMT 18 0.61% CYP90D1 17 0.58% 7DLH 16 0.54% BBE 15 0.51% CCR 15 0.51% CYP719 13 0.44% COR 12 0.41% MPO 12 0.41% F3'5'H/CYP75A 12 0.41% ANR 12 0.41% DFR 11 0.37% 8HGO 10 0.34% LAMT 10 0.34% BR6OX1/CYP85A1 10 0.34% FPPS 10 0.34% ROT3/CYP90C1 9 0.31% HPPR 8 0.27% GGPPS 8 0.27% CHI 6 0.2% SQS/FDFT1 6 0.2% CYP51G1 6 0.2% AACT 6 0.2% CNMT 5 0.17% CYP80B1 5 0.17% HMGR 5 0.17% DXS 5 0.17% TYDC_DDC 4 0.14% ISY 4 0.14% CHS 4 0.14% CCoAOMT 4 0.14% CPR 4 0.14% MVK 4 0.14% HMGS 4 0.14% FLS 3 0.1% SQE 3 0.1% SMO1/SMO2 3 0.1% DWF5 3 0.1% MVD 3 0.1% XMT_MXMT_DXMT 2 0.07% ADC 2 0.07% ODC 2 0.07% TDC 2 0.07% CPI1 2 0.07% DWF1 2 0.07% DXR 2 0.07% MCT/IspD 2 0.07% HDR/IspH 2 0.07% FK 1 0.03% HYD1 1 0.03% DET2 1 0.03% DWF7 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% IDI 1 0.03% MDS/IspF 1 0.03% GPPS 1 0.03% PMK 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 468 20 UGT (159) View species results
Alkaloid pathway 319 24 SGD (52) View species results
Phenylpropanoid pathway 276 13 POD (100) View species results
Flavonoid pathway 116 12 UFGT (40) View species results
Rosmarinic acid pathway 108 7 4CL (31) View species results
Steroid pathway 67 11 CAS (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 975 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 253 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
EulmGWHAAAL000000200027600.1 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
EulmGWHAAAL000000440047910.1 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
EulmGWHAAAL000000880079720.1 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
EulmGWHAAAL000001680117940.1 Rosmarinic Acid CPR medium pass CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN