Eucommia ulmoides (eucommia_ulmoides)
Imported from atlas release summary for Eucommia ulmoides.
1354
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1354
Candidate Genes
BAHD
6.64%
C4H
5.9%
UGT
5.83%
4CL
4.27%
C3'H/CYP98A
3.97%
POD
3.83%
IFS
3.8%
CYP76
3.32%
Other Families
62.44%
More Families (96)
7DLGT
94
3.19%
T3O
76
2.58%
F3H
75
2.54%
STR
73
2.47%
DWF4/CYP90B1
69
2.34%
NMT
64
2.17%
SGD
56
1.9%
H6H
55
1.86%
UFGT
55
1.86%
TPS
51
1.73%
CAD
47
1.59%
LAC
44
1.49%
CODM/T6ODM
43
1.46%
F3'H/CYP75B
43
1.46%
GES
40
1.36%
IFR
40
1.36%
GS
38
1.29%
CAS
37
1.25%
CYP71
35
1.19%
G8O/G8H
34
1.15%
SMT1/SMT2/SMT3
33
1.12%
HCT
31
1.05%
RAS
26
0.88%
TRI/TRII
25
0.85%
F5H/CYP84A
24
0.81%
TAT
24
0.81%
BR6OX2/CYP85A2
23
0.78%
IO
22
0.75%
PYKS
22
0.75%
T16H
22
0.75%
FNS
22
0.75%
COMT
22
0.75%
CSE
22
0.75%
NCS
21
0.71%
PMT
21
0.71%
ANS/LDOX
21
0.71%
PAL
21
0.71%
SLS
19
0.64%
CPD/CYP90A1
19
0.64%
16OMT
18
0.61%
CYP90D1
17
0.58%
7DLH
16
0.54%
BBE
15
0.51%
CCR
15
0.51%
CYP719
13
0.44%
COR
12
0.41%
MPO
12
0.41%
F3'5'H/CYP75A
12
0.41%
ANR
12
0.41%
DFR
11
0.37%
8HGO
10
0.34%
LAMT
10
0.34%
BR6OX1/CYP85A1
10
0.34%
FPPS
10
0.34%
ROT3/CYP90C1
9
0.31%
HPPR
8
0.27%
GGPPS
8
0.27%
CHI
6
0.2%
SQS/FDFT1
6
0.2%
CYP51G1
6
0.2%
AACT
6
0.2%
CNMT
5
0.17%
CYP80B1
5
0.17%
HMGR
5
0.17%
DXS
5
0.17%
TYDC_DDC
4
0.14%
ISY
4
0.14%
CHS
4
0.14%
CCoAOMT
4
0.14%
CPR
4
0.14%
MVK
4
0.14%
HMGS
4
0.14%
FLS
3
0.1%
SQE
3
0.1%
SMO1/SMO2
3
0.1%
DWF5
3
0.1%
MVD
3
0.1%
XMT_MXMT_DXMT
2
0.07%
ADC
2
0.07%
ODC
2
0.07%
TDC
2
0.07%
CPI1
2
0.07%
DWF1
2
0.07%
DXR
2
0.07%
MCT/IspD
2
0.07%
HDR/IspH
2
0.07%
FK
1
0.03%
HYD1
1
0.03%
DET2
1
0.03%
DWF7
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
IDI
1
0.03%
MDS/IspF
1
0.03%
GPPS
1
0.03%
PMK
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 468 | 20 | UGT (159) | View species results |
| Alkaloid pathway | 319 | 24 | SGD (52) | View species results |
| Phenylpropanoid pathway | 276 | 13 | POD (100) | View species results |
| Flavonoid pathway | 116 | 12 | UFGT (40) | View species results |
| Rosmarinic acid pathway | 108 | 7 | 4CL (31) | View species results |
| Steroid pathway | 67 | 11 | CAS (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 975 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 253 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| EulmGWHAAAL000000020001620.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000000020002350.1 | Alkaloid | NCS | medium | pass | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000000120016670.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000000120017190.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000000300035900.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| EulmGWHAAAL000000300035910.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| EulmGWHAAAL000000300035920.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| EulmGWHAAAL000000300035930.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| EulmGWHAAAL000000820075930.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000000950083810.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000001130093500.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000001560115150.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000002060128020.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| EulmGWHAAAL000054190163980.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000071310173050.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| EulmGWHAAAL000102780187560.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000123370195420.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| EulmGWHAAAL000145930203290.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000148900204320.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| EulmGWHAAAL000154550206960.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| EulmGWHAAAL000154550206980.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |