Eutrema salsugineum (eutrema_salsugineum)
Imported from atlas release summary for Eutrema salsugineum.
1374
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1374
Candidate Genes
BAHD
6.94%
C4H
6.14%
C3'H/CYP98A
5.78%
4CL
5.41%
POD
4.4%
IFS
3.45%
CYP76
3.45%
T3O
3.21%
Other Families
61.22%
More Families (95)
NMT
101
3.09%
UGT
97
2.96%
7DLGT
93
2.84%
UFGT
93
2.84%
DWF4/CYP90B1
88
2.69%
F3H
85
2.6%
SMT1/SMT2/SMT3
67
2.05%
F3'H/CYP75B
65
1.99%
SGD
64
1.96%
STR
57
1.74%
BR6OX2/CYP85A2
51
1.56%
CYP71
51
1.56%
CODM/T6ODM
46
1.41%
TRI/TRII
44
1.34%
H6H
40
1.22%
IFR
37
1.13%
CSE
35
1.07%
CAD
33
1.01%
BBE
32
0.98%
PYKS
30
0.92%
CAS
30
0.92%
LAC
29
0.89%
SLS
26
0.79%
T16H
26
0.79%
LAMT
26
0.79%
TAT
26
0.79%
COMT
25
0.76%
F5H/CYP84A
24
0.73%
IO
23
0.7%
ANR
23
0.7%
CCR
23
0.7%
HCT
23
0.7%
RAS
23
0.7%
GS
19
0.58%
G8O/G8H
19
0.58%
FNS
19
0.58%
CPD/CYP90A1
19
0.58%
TPS
19
0.58%
16OMT
18
0.55%
PAL
18
0.55%
GES
17
0.52%
8HGO
17
0.52%
CYP90D1
16
0.49%
BR6OX1/CYP85A1
15
0.46%
F3'5'H/CYP75A
14
0.43%
COR
13
0.4%
ROT3/CYP90C1
13
0.4%
GGPPS
13
0.4%
NCS
12
0.37%
7DLH
11
0.34%
PMT
11
0.34%
FPPS
10
0.31%
MVD
9
0.28%
CNMT
8
0.24%
ANS/LDOX
8
0.24%
CPR
8
0.24%
CYP51G1
8
0.24%
AACT
8
0.24%
DFR
7
0.21%
DET2
7
0.21%
SQS/FDFT1
7
0.21%
MPO
6
0.18%
CYP719
6
0.18%
CHS
6
0.18%
CHI
6
0.18%
CCoAOMT
6
0.18%
SMO1/SMO2
6
0.18%
CYP80B1
5
0.15%
SQE
5
0.15%
XMT_MXMT_DXMT
4
0.12%
CYP80F1
4
0.12%
DWF7
4
0.12%
DWF1
4
0.12%
DXS
4
0.12%
MVK
4
0.12%
ADC
3
0.09%
HPPR
3
0.09%
HMGR
3
0.09%
IDI
3
0.09%
MCT/IspD
3
0.09%
ISY
2
0.06%
TYDC_DDC
2
0.06%
PMK
2
0.06%
DXR
2
0.06%
ODC
1
0.03%
TDC
1
0.03%
FLS
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
HDR/IspH
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 410 | 18 | BAHD (190) | View species results |
| Alkaloid pathway | 318 | 20 | NMT (62) | View species results |
| Phenylpropanoid pathway | 293 | 11 | POD (139) | View species results |
| Flavonoid pathway | 152 | 10 | UFGT (88) | View species results |
| Rosmarinic acid pathway | 103 | 7 | C4H (35) | View species results |
| Steroid pathway | 98 | 12 | SMT1/SMT2/SMT3 (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1205 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 273 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Esalscaffold_100041660.1 | Alkaloid | COR | medium | pass | COR__00003__sp_Q9SQ68_COR13_PAPSO |
| Esalscaffold_100041670.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Esalscaffold_100041680.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Esalscaffold_100041700.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Esalscaffold_160096110.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Esalscaffold_20114450.1 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| Esalscaffold_20144210.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Esalscaffold_20144230.1 | Alkaloid | COR | medium | pass | COR__00003__sp_Q9SQ68_COR13_PAPSO |
| Esalscaffold_20144250.1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Esalscaffold_50203480.1 | Alkaloid | COR | low | borderline | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Esalscaffold_60212200.1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Esalscaffold_80243810.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Esalscaffold_80243820.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |