PlantSME Plant secondary metabolism enzyme database

Eutrema salsugineum (eutrema_salsugineum)

Imported from atlas release summary for Eutrema salsugineum.

1374
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.84% Alkaloid pathway 23.14% Phenylpropanoid pathway 21.32% Flavonoid pathway 11.06% Rosmarinic acid pathway 7.5% Steroid pathway 7.13%
Family Distribution
BAHD 6.94% C4H 6.14% C3'H/CYP98A 5.78% 4CL 5.41% POD 4.4% IFS 3.45% CYP76 3.45% T3O 3.21%
Other Families 61.22%
More Families (95)
NMT 101 3.09% UGT 97 2.96% 7DLGT 93 2.84% UFGT 93 2.84% DWF4/CYP90B1 88 2.69% F3H 85 2.6% SMT1/SMT2/SMT3 67 2.05% F3'H/CYP75B 65 1.99% SGD 64 1.96% STR 57 1.74% BR6OX2/CYP85A2 51 1.56% CYP71 51 1.56% CODM/T6ODM 46 1.41% TRI/TRII 44 1.34% H6H 40 1.22% IFR 37 1.13% CSE 35 1.07% CAD 33 1.01% BBE 32 0.98% PYKS 30 0.92% CAS 30 0.92% LAC 29 0.89% SLS 26 0.79% T16H 26 0.79% LAMT 26 0.79% TAT 26 0.79% COMT 25 0.76% F5H/CYP84A 24 0.73% IO 23 0.7% ANR 23 0.7% CCR 23 0.7% HCT 23 0.7% RAS 23 0.7% GS 19 0.58% G8O/G8H 19 0.58% FNS 19 0.58% CPD/CYP90A1 19 0.58% TPS 19 0.58% 16OMT 18 0.55% PAL 18 0.55% GES 17 0.52% 8HGO 17 0.52% CYP90D1 16 0.49% BR6OX1/CYP85A1 15 0.46% F3'5'H/CYP75A 14 0.43% COR 13 0.4% ROT3/CYP90C1 13 0.4% GGPPS 13 0.4% NCS 12 0.37% 7DLH 11 0.34% PMT 11 0.34% FPPS 10 0.31% MVD 9 0.28% CNMT 8 0.24% ANS/LDOX 8 0.24% CPR 8 0.24% CYP51G1 8 0.24% AACT 8 0.24% DFR 7 0.21% DET2 7 0.21% SQS/FDFT1 7 0.21% MPO 6 0.18% CYP719 6 0.18% CHS 6 0.18% CHI 6 0.18% CCoAOMT 6 0.18% SMO1/SMO2 6 0.18% CYP80B1 5 0.15% SQE 5 0.15% XMT_MXMT_DXMT 4 0.12% CYP80F1 4 0.12% DWF7 4 0.12% DWF1 4 0.12% DXS 4 0.12% MVK 4 0.12% ADC 3 0.09% HPPR 3 0.09% HMGR 3 0.09% IDI 3 0.09% MCT/IspD 3 0.09% ISY 2 0.06% TYDC_DDC 2 0.06% PMK 2 0.06% DXR 2 0.06% ODC 1 0.03% TDC 1 0.03% FLS 1 0.03% FK 1 0.03% CPI1 1 0.03% HYD1 1 0.03% DWF5 1 0.03% HDR/IspH 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 410 18 BAHD (190) View species results
Alkaloid pathway 318 20 NMT (62) View species results
Phenylpropanoid pathway 293 11 POD (139) View species results
Flavonoid pathway 152 10 UFGT (88) View species results
Rosmarinic acid pathway 103 7 C4H (35) View species results
Steroid pathway 98 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1205 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 273 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
Esalscaffold_10009790.1 Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH
Esalscaffold_10015890.1 Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
Esalscaffold_160098150.1 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Esalscaffold_50188600.1 Rosmarinic Acid CPR low borderline CPR__00008__sp_Q9SB48_NCPR1_ARATH
Esalscaffold_60207080.1 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
Esalscaffold_60207080.2 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
Esalscaffold_60207080.3 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
Esalscaffold_70230350.1 Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI