PlantSME Plant secondary metabolism enzyme database

Faidherbia albida (faidherbia_albida)

Imported from atlas release summary for Faidherbia albida.

1493
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.41% Alkaloid pathway 21.23% Phenylpropanoid pathway 21.1% Flavonoid pathway 13.26% Rosmarinic acid pathway 8.04% Steroid pathway 5.96%
Family Distribution
C4H 5.61% C3'H/CYP98A 5.45% BAHD 5.4% UGT 4.35% CYP76 3.7% 7DLGT 3.65% IFS 3.39% UFGT 3.39%
Other Families 65.06%
More Families (96)
4CL 132 3.39% POD 129 3.32% F3H 125 3.21% T3O 114 2.93% CODM/T6ODM 92 2.37% DWF4/CYP90B1 87 2.24% NMT 83 2.13% F3'H/CYP75B 78 2.01% CAD 73 1.88% BR6OX2/CYP85A2 66 1.7% H6H 58 1.49% STR 57 1.47% COMT 54 1.39% TRI/TRII 53 1.36% CAS 53 1.36% TPS 51 1.31% CYP71 49 1.26% G8O/G8H 47 1.21% SMT1/SMT2/SMT3 46 1.18% GES 44 1.13% HCT 42 1.08% T16H 41 1.05% CSE 39 1.0% PYKS 38 0.98% RAS 38 0.98% FNS 37 0.95% IFR 36 0.93% CYP90D1 35 0.9% BBE 34 0.87% GS 34 0.87% 16OMT 32 0.82% LAC 32 0.82% F5H/CYP84A 31 0.8% IO 26 0.67% PMT 26 0.67% ANR 25 0.64% COR 24 0.62% SLS 23 0.59% NCS 21 0.54% SGD 20 0.51% F3'5'H/CYP75A 20 0.51% CCR 19 0.49% PAL 18 0.46% 7DLH 17 0.44% DFR 16 0.41% BR6OX1/CYP85A1 16 0.41% ANS/LDOX 15 0.39% TAT 15 0.39% CYP51G1 14 0.36% CPD/CYP90A1 14 0.36% LAMT 13 0.33% 8HGO 12 0.31% TDC 12 0.31% DXS 12 0.31% CHS 11 0.28% ISY 10 0.26% FLS 10 0.26% ROT3/CYP90C1 10 0.26% FPPS 10 0.26% CNMT 9 0.23% 6OMT_4OMT_SOMT 8 0.21% CPR 8 0.21% CYP80B1 7 0.18% CCoAOMT 7 0.18% AACT 7 0.18% MPO 6 0.15% HPPR 6 0.15% SQS/FDFT1 6 0.15% GGPPS 6 0.15% TYDC_DDC 5 0.13% CYP719 4 0.1% CHI 4 0.1% SQE 4 0.1% DWF7 4 0.1% SMO1/SMO2 4 0.1% MVD 4 0.1% PMK 4 0.1% CPI1 3 0.08% DWF1 3 0.08% DET2 3 0.08% IDI 3 0.08% HDR/IspH 3 0.08% MCT/IspD 3 0.08% XMT_MXMT_DXMT 2 0.05% ADC 2 0.05% HMGS 2 0.05% DXR 2 0.05% HDS/IspG 2 0.05% CMK/IspE 2 0.05% MVK 2 0.05% CYP80F1 1 0.03% HYD1 1 0.03% FK 1 0.03% DWF5 1 0.03% MDS/IspF 1 0.03% HMGR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 454 19 BAHD (164) View species results
Alkaloid pathway 317 23 7DLGT (58) View species results
Phenylpropanoid pathway 315 11 POD (121) View species results
Flavonoid pathway 198 13 UFGT (121) View species results
Rosmarinic acid pathway 120 7 C4H (45) View species results
Steroid pathway 89 11 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1406 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 290 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status
Falbscaffold1460_cov1850049530 Alkaloid COR medium pass
Falbscaffold15108_cov2170053950 Alkaloid COR medium pass
Falbscaffold164_cov1780065060 Alkaloid COR low borderline
Falbscaffold1871_cov2190083160 Alkaloid COR medium pass
Falbscaffold1871_cov2190083200 Alkaloid COR medium pass
Falbscaffold2185_cov1740104540 Alkaloid COR medium pass
Falbscaffold3733_cov2190163430 Alkaloid COR medium pass
Falbscaffold3733_cov2190163460 Alkaloid COR medium pass
Falbscaffold3733_cov2190163470 Alkaloid COR medium pass
Falbscaffold4108_cov2180170700 Alkaloid COR medium pass
Falbscaffold4108_cov2180170710 Alkaloid COR medium pass
Falbscaffold4108_cov2180170740 Alkaloid COR medium pass
Falbscaffold4370_cov1780175430 Alkaloid COR medium pass
Falbscaffold481_cov1790182590 Alkaloid COR medium pass
Falbscaffold494_cov2020184270 Alkaloid COR low borderline
Falbscaffold626_cov1910206190 Alkaloid COR low borderline
Falbscaffold647_cov2120209490 Alkaloid COR medium pass
Falbscaffold80928_cov1800248490 Alkaloid COR low borderline
Falbscaffold9252_cov2210278480 Alkaloid COR low borderline
Falbscaffold9252_cov2210278490 Alkaloid COR medium pass
Falbscaffold9252_cov2210278510 Alkaloid COR medium pass
Falbscaffold944_cov1900282990 Alkaloid COR low borderline
Falbscaffold944_cov1900283000 Alkaloid COR medium pass
Falbscaffold944_cov1900283010 Alkaloid COR medium pass