PlantSME Plant secondary metabolism enzyme database

Fontinalis (fontinalis)

Imported from atlas release summary for Fontinalis.

475
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.95% Terpenoid pathway 24.63% Alkaloid pathway 18.74% Flavonoid pathway 11.37% Rosmarinic acid pathway 10.74% Steroid pathway 7.58%
Family Distribution
BAHD 6.9% 4CL 6.56% POD 6.48% C4H 5.55% C3'H/CYP98A 4.63% NMT 4.04% CYP76 3.62% IFR 3.11%
Other Families 59.13%
More Families (92)
PAL 33 2.78% STR 32 2.69% GS 28 2.35% F3H 28 2.35% IFS 27 2.27% T3O 26 2.19% BR6OX2/CYP85A2 24 2.02% F3'H/CYP75B 22 1.85% DWF4/CYP90B1 22 1.85% PYKS 19 1.6% SMT1/SMT2/SMT3 19 1.6% CODM/T6ODM 16 1.35% UFGT 16 1.35% 7DLGT 15 1.26% CAD 15 1.26% UGT 15 1.26% IO 14 1.18% H6H 14 1.18% CYP71 14 1.18% TRI/TRII 12 1.01% CYP90D1 12 1.01% CSE 11 0.93% CAS 11 0.93% CHS 10 0.84% TDC 8 0.67% SLS 8 0.67% F3'5'H/CYP75A 8 0.67% SGD 7 0.59% PMT 7 0.59% CNMT 7 0.59% 8HGO 7 0.59% NCS 7 0.59% LAC 7 0.59% SQS/FDFT1 7 0.59% LAMT 6 0.5% COR 6 0.5% CYP80B1 6 0.5% CCR 6 0.5% COMT 6 0.5% GGPPS 6 0.5% AACT 6 0.5% TYDC_DDC 5 0.42% 7DLH 5 0.42% BBE 5 0.42% T16H 5 0.42% ANR 5 0.42% HCT 5 0.42% CPR 5 0.42% RAS 5 0.42% TAT 5 0.42% MVK 5 0.42% G8O/G8H 4 0.34% 16OMT 4 0.34% FNS 4 0.34% DET2 4 0.34% DWF5 4 0.34% CPD/CYP90A1 4 0.34% FPPS 4 0.34% ADC 3 0.25% MPO 3 0.25% DFR 3 0.25% CHI 3 0.25% ROT3/CYP90C1 3 0.25% MVD 3 0.25% HDR/IspH 3 0.25% F5H/CYP84A 2 0.17% CCoAOMT 2 0.17% SQE 2 0.17% DWF7 2 0.17% SMO1/SMO2 2 0.17% HMGR 2 0.17% HDS/IspG 2 0.17% XMT_MXMT_DXMT 1 0.08% 6OMT_4OMT_SOMT 1 0.08% GES 1 0.08% ISY 1 0.08% FLS 1 0.08% ANS/LDOX 1 0.08% HPPR 1 0.08% HYD1 1 0.08% CPI1 1 0.08% DWF1 1 0.08% FK 1 0.08% CYP51G1 1 0.08% HMGS 1 0.08% MCT/IspD 1 0.08% CMK/IspE 1 0.08% DXS 1 0.08% DXR 1 0.08% IDI 1 0.08% MDS/IspF 1 0.08% TPS 1 0.08%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 128 10 POD (72) View species results
Terpenoid pathway 117 19 BAHD (53) View species results
Alkaloid pathway 89 16 NMT (24) View species results
Flavonoid pathway 54 7 4CL (13) View species results
Rosmarinic acid pathway 51 7 C4H (15) View species results
Steroid pathway 36 13 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 21 371 7DLH, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 92 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
Fontinalis2510620013070 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
Fontinalis2739860048940 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Fontinalis2770080074970 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Fontinalis2820490183210 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Fontinalis2822220189460 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Fontinalis2822220189470 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Fontinalis2826850204800 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH