PlantSME Plant secondary metabolism enzyme database

Fragaria chiloensis (fragaria_chiloensis)

Imported from atlas release summary for Fragaria chiloensis.

4280
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.3% Alkaloid pathway 22.57% Phenylpropanoid pathway 20.72% Flavonoid pathway 10.84% Rosmarinic acid pathway 8.36% Steroid pathway 7.2%
Family Distribution
C4H 6.43% C3'H/CYP98A 6.07% BAHD 5.66% IFS 4.28% UGT 4.06% CYP76 3.91% 4CL 3.58% T3O 3.49%
Other Families 62.52%
More Families (97)
POD 372 3.47% 7DLGT 351 3.27% UFGT 316 2.95% F3H 268 2.5% DWF4/CYP90B1 257 2.4% NMT 252 2.35% BR6OX2/CYP85A2 219 2.04% F3'H/CYP75B 217 2.02% STR 209 1.95% LAC 190 1.77% CAD 186 1.73% H6H 167 1.56% CODM/T6ODM 155 1.44% SMT1/SMT2/SMT3 149 1.39% CAS 144 1.34% TPS 140 1.3% GES 128 1.19% CYP90D1 117 1.09% TRI/TRII 116 1.08% CYP71 108 1.01% GS 104 0.97% SLS 104 0.97% T16H 92 0.86% IFR 90 0.84% G8O/G8H 85 0.79% SGD 84 0.78% PYKS 79 0.74% HCT 77 0.72% NCS 76 0.71% IO 76 0.71% ANR 76 0.71% PMT 73 0.68% COMT 72 0.67% RAS 72 0.67% CSE 70 0.65% CCR 70 0.65% F3'5'H/CYP75A 67 0.62% SQE 61 0.57% BR6OX1/CYP85A1 61 0.57% 7DLH 58 0.54% BBE 56 0.52% COR 55 0.51% F5H/CYP84A 52 0.48% TAT 51 0.48% FNS 47 0.44% ANS/LDOX 44 0.41% DFR 43 0.4% LAMT 41 0.38% CPD/CYP90A1 41 0.38% 8HGO 34 0.32% ROT3/CYP90C1 32 0.3% HMGR 32 0.3% CCoAOMT 31 0.29% MPO 30 0.28% 16OMT 27 0.25% CNMT 26 0.24% AACT 26 0.24% CYP51G1 24 0.22% CYP719 22 0.21% CHS 22 0.21% HPPR 22 0.21% PAL 21 0.2% CPR 20 0.19% DET2 19 0.18% FPPS 19 0.18% TYDC_DDC 17 0.16% GGPPS 17 0.16% CYP80B1 15 0.14% ISY 15 0.14% MVK 14 0.13% 6OMT_4OMT_SOMT 12 0.11% SMO1/SMO2 12 0.11% DXS 12 0.11% MVD 12 0.11% PMK 11 0.1% TDC 10 0.09% MCT/IspD 9 0.08% ODC 8 0.07% SQS/FDFT1 8 0.07% IDI 8 0.07% DWF1 7 0.07% HDR/IspH 7 0.07% XMT_MXMT_DXMT 6 0.06% ADC 6 0.06% CYP80F1 6 0.06% HYD1 6 0.06% CMK/IspE 6 0.06% CHI 5 0.05% DXR 5 0.05% CPI1 4 0.04% DWF5 4 0.04% HDS/IspG 4 0.04% MDS/IspF 4 0.04% HMGS 4 0.04% FLS 3 0.03% FK 3 0.03% DWF7 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1297 20 BAHD (475) View species results
Alkaloid pathway 966 27 7DLGT (141) View species results
Phenylpropanoid pathway 887 13 POD (324) View species results
Flavonoid pathway 464 14 UFGT (273) View species results
Rosmarinic acid pathway 358 7 C4H (167) View species results
Steroid pathway 308 13 CAS (117) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4247 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 756 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP71
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Gene Pathway Family Confidence Status Best Target
fragaria_chiloensis_maker-6C-augustus-gene-318.126-mRNA-1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
fragaria_chiloensis_maker-6C-exonerate_est2genome-gene-11.140-mRNA-1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
fragaria_chiloensis_maker-6D-augustus-gene-116.15-mRNA-1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
fragaria_chiloensis_maker-6D-exonerate_est2genome-gene-11.167-mRNA-1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
fragaria_chiloensis_maker-7B-exonerate_est2genome-gene-44.68-mRNA-1 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
fragaria_chiloensis_maker-7D-augustus-gene-107.89-mRNA-1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
fragaria_chiloensis_maker-7D-augustus-gene-107.91-mRNA-1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
fragaria_chiloensis_maker-7D-augustus-gene-52.208-mRNA-1 Terpenoid CYP71 medium borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO