Fragaria chiloensis (fragaria_chiloensis)
Imported from atlas release summary for Fragaria chiloensis.
4280
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
4280
Candidate Genes
C4H
6.43%
C3'H/CYP98A
6.07%
BAHD
5.66%
IFS
4.28%
UGT
4.06%
CYP76
3.91%
4CL
3.58%
T3O
3.49%
Other Families
62.52%
More Families (97)
POD
372
3.47%
7DLGT
351
3.27%
UFGT
316
2.95%
F3H
268
2.5%
DWF4/CYP90B1
257
2.4%
NMT
252
2.35%
BR6OX2/CYP85A2
219
2.04%
F3'H/CYP75B
217
2.02%
STR
209
1.95%
LAC
190
1.77%
CAD
186
1.73%
H6H
167
1.56%
CODM/T6ODM
155
1.44%
SMT1/SMT2/SMT3
149
1.39%
CAS
144
1.34%
TPS
140
1.3%
GES
128
1.19%
CYP90D1
117
1.09%
TRI/TRII
116
1.08%
CYP71
108
1.01%
GS
104
0.97%
SLS
104
0.97%
T16H
92
0.86%
IFR
90
0.84%
G8O/G8H
85
0.79%
SGD
84
0.78%
PYKS
79
0.74%
HCT
77
0.72%
NCS
76
0.71%
IO
76
0.71%
ANR
76
0.71%
PMT
73
0.68%
COMT
72
0.67%
RAS
72
0.67%
CSE
70
0.65%
CCR
70
0.65%
F3'5'H/CYP75A
67
0.62%
SQE
61
0.57%
BR6OX1/CYP85A1
61
0.57%
7DLH
58
0.54%
BBE
56
0.52%
COR
55
0.51%
F5H/CYP84A
52
0.48%
TAT
51
0.48%
FNS
47
0.44%
ANS/LDOX
44
0.41%
DFR
43
0.4%
LAMT
41
0.38%
CPD/CYP90A1
41
0.38%
8HGO
34
0.32%
ROT3/CYP90C1
32
0.3%
HMGR
32
0.3%
CCoAOMT
31
0.29%
MPO
30
0.28%
16OMT
27
0.25%
CNMT
26
0.24%
AACT
26
0.24%
CYP51G1
24
0.22%
CYP719
22
0.21%
CHS
22
0.21%
HPPR
22
0.21%
PAL
21
0.2%
CPR
20
0.19%
DET2
19
0.18%
FPPS
19
0.18%
TYDC_DDC
17
0.16%
GGPPS
17
0.16%
CYP80B1
15
0.14%
ISY
15
0.14%
MVK
14
0.13%
6OMT_4OMT_SOMT
12
0.11%
SMO1/SMO2
12
0.11%
DXS
12
0.11%
MVD
12
0.11%
PMK
11
0.1%
TDC
10
0.09%
MCT/IspD
9
0.08%
ODC
8
0.07%
SQS/FDFT1
8
0.07%
IDI
8
0.07%
DWF1
7
0.07%
HDR/IspH
7
0.07%
XMT_MXMT_DXMT
6
0.06%
ADC
6
0.06%
CYP80F1
6
0.06%
HYD1
6
0.06%
CMK/IspE
6
0.06%
CHI
5
0.05%
DXR
5
0.05%
CPI1
4
0.04%
DWF5
4
0.04%
HDS/IspG
4
0.04%
MDS/IspF
4
0.04%
HMGS
4
0.04%
FLS
3
0.03%
FK
3
0.03%
DWF7
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1297 | 20 | BAHD (475) | View species results |
| Alkaloid pathway | 966 | 27 | 7DLGT (141) | View species results |
| Phenylpropanoid pathway | 887 | 13 | POD (324) | View species results |
| Flavonoid pathway | 464 | 14 | UFGT (273) | View species results |
| Rosmarinic acid pathway | 358 | 7 | C4H (167) | View species results |
| Steroid pathway | 308 | 13 | CAS (117) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4247 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 756 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_chiloensis_augustus_masked-1A-processed-gene-144.47-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| fragaria_chiloensis_augustus_masked-1C-processed-gene-134.70-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| fragaria_chiloensis_augustus_masked-2A-processed-gene-124.122-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| fragaria_chiloensis_augustus_masked-2A-processed-gene-155.0-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| fragaria_chiloensis_augustus_masked-2A-processed-gene-19.22-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| fragaria_chiloensis_augustus_masked-2A-processed-gene-21.5-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| fragaria_chiloensis_augustus_masked-2B-processed-gene-163.94-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| fragaria_chiloensis_augustus_masked-2C-processed-gene-133.52-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| fragaria_chiloensis_augustus_masked-2C-processed-gene-21.141-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| fragaria_chiloensis_augustus_masked-2D-processed-gene-188.96-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| fragaria_chiloensis_augustus_masked-2D-processed-gene-23.90-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| fragaria_chiloensis_augustus_masked-2D-processed-gene-52.20-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| fragaria_chiloensis_augustus_masked-3C-processed-gene-29.99-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| fragaria_chiloensis_augustus_masked-3C-processed-gene-56.4-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| fragaria_chiloensis_augustus_masked-3C-processed-gene-72.12-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| fragaria_chiloensis_augustus_masked-3C-processed-gene-75.14-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| fragaria_chiloensis_augustus_masked-3D-processed-gene-230.11-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| fragaria_chiloensis_augustus_masked-3D-processed-gene-230.12-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| fragaria_chiloensis_augustus_masked-4A-processed-gene-1.20-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| fragaria_chiloensis_augustus_masked-4A-processed-gene-159.2-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| fragaria_chiloensis_augustus_masked-4A-processed-gene-258.65-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| fragaria_chiloensis_augustus_masked-4A-processed-gene-88.151-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| fragaria_chiloensis_augustus_masked-4B-processed-gene-105.111-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| fragaria_chiloensis_augustus_masked-4B-processed-gene-250.20-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| fragaria_chiloensis_augustus_masked-4B-processed-gene-77.13-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| fragaria_chiloensis_augustus_masked-4C-processed-gene-1.27-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| fragaria_chiloensis_augustus_masked-4C-processed-gene-14.20-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00029__sp_Q42963_PMT1_TOBAC |
| fragaria_chiloensis_augustus_masked-4C-processed-gene-239.19-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| fragaria_chiloensis_augustus_masked-4D-processed-gene-170.22-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |
| fragaria_chiloensis_augustus_masked-4D-processed-gene-200.109-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| fragaria_chiloensis_augustus_masked-4D-processed-gene-250.120-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00030__sp_Q43088_RBCMT_PEA |
| fragaria_chiloensis_augustus_masked-4D-processed-gene-288.6-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| fragaria_chiloensis_augustus_masked-5A-processed-gene-107.80-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| fragaria_chiloensis_augustus_masked-5A-processed-gene-148.121-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| fragaria_chiloensis_augustus_masked-5B-processed-gene-233.12-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| fragaria_chiloensis_augustus_masked-5B-processed-gene-233.13-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| fragaria_chiloensis_augustus_masked-5C-processed-gene-15.96-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| fragaria_chiloensis_augustus_masked-5C-processed-gene-16.38-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| fragaria_chiloensis_augustus_masked-5C-processed-gene-168.2-mRNA-1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| fragaria_chiloensis_augustus_masked-6A-processed-gene-1.8-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| fragaria_chiloensis_augustus_masked-6A-processed-gene-193.7-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| fragaria_chiloensis_augustus_masked-6A-processed-gene-3.145-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| fragaria_chiloensis_augustus_masked-6B-processed-gene-2.100-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| fragaria_chiloensis_augustus_masked-6B-processed-gene-210.8-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| fragaria_chiloensis_augustus_masked-6C-processed-gene-166.0-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| fragaria_chiloensis_augustus_masked-6D-processed-gene-104.18-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| fragaria_chiloensis_augustus_masked-6D-processed-gene-151.11-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| fragaria_chiloensis_augustus_masked-6D-processed-gene-337.65-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| fragaria_chiloensis_augustus_masked-7A-processed-gene-11.101-mRNA-1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| fragaria_chiloensis_augustus_masked-7A-processed-gene-21.17-mRNA-1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |