Fragaria nilgerrensis (fragaria_nilgerrensis)
Imported from atlas release summary for Fragaria nilgerrensis.
1502
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1502
Candidate Genes
C4H
6.59%
C3'H/CYP98A
6.38%
BAHD
5.33%
UGT
4.4%
7DLGT
4.32%
UFGT
4.3%
IFS
4.03%
CYP76
3.48%
Other Families
61.17%
More Families (96)
T3O
118
3.11%
POD
118
3.11%
4CL
117
3.08%
F3H
109
2.87%
BR6OX2/CYP85A2
88
2.32%
F3'H/CYP75B
84
2.21%
DWF4/CYP90B1
84
2.21%
CAD
72
1.9%
CODM/T6ODM
70
1.85%
NMT
69
1.82%
H6H
59
1.56%
STR
55
1.45%
LAC
53
1.4%
CAS
48
1.27%
CYP71
46
1.21%
CYP90D1
45
1.19%
SMT1/SMT2/SMT3
44
1.16%
T16H
43
1.13%
SLS
42
1.11%
7DLH
41
1.08%
GS
40
1.05%
GES
39
1.03%
TPS
39
1.03%
TRI/TRII
37
0.98%
CSE
35
0.92%
HCT
35
0.92%
IFR
30
0.79%
ANR
30
0.79%
TAT
29
0.76%
SGD
28
0.74%
BR6OX1/CYP85A1
27
0.71%
F5H/CYP84A
24
0.63%
F3'5'H/CYP75A
23
0.61%
IO
22
0.58%
RAS
22
0.58%
PMT
21
0.55%
CCR
21
0.55%
PYKS
20
0.53%
COR
19
0.5%
G8O/G8H
19
0.5%
CPD/CYP90A1
19
0.5%
FNS
18
0.47%
COMT
18
0.47%
ANS/LDOX
17
0.45%
NCS
16
0.42%
BBE
16
0.42%
CCoAOMT
13
0.34%
LAMT
12
0.32%
GGPPS
12
0.32%
16OMT
11
0.29%
8HGO
11
0.29%
CYP51G1
11
0.29%
SQE
11
0.29%
HMGR
10
0.26%
MPO
9
0.24%
PAL
9
0.24%
HPPR
9
0.24%
ROT3/CYP90C1
9
0.24%
DFR
8
0.21%
CNMT
7
0.18%
FPPS
7
0.18%
AACT
7
0.18%
CHS
6
0.16%
DET2
6
0.16%
CYP719
5
0.13%
TYDC_DDC
5
0.13%
ISY
5
0.13%
CPR
5
0.13%
SQS/FDFT1
5
0.13%
TDC
4
0.11%
SMO1/SMO2
4
0.11%
MVD
4
0.11%
DXS
4
0.11%
CYP80B1
3
0.08%
6OMT_4OMT_SOMT
3
0.08%
ODC
3
0.08%
IDI
3
0.08%
MVK
3
0.08%
XMT_MXMT_DXMT
2
0.05%
ADC
2
0.05%
CHI
2
0.05%
DWF5
2
0.05%
DWF1
2
0.05%
PMK
2
0.05%
CMK/IspE
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
CYP80F1
1
0.03%
FK
1
0.03%
HYD1
1
0.03%
DWF7
1
0.03%
CPI1
1
0.03%
HDS/IspG
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 454 | 19 | BAHD (166) | View species results |
| Alkaloid pathway | 348 | 20 | 7DLGT (68) | View species results |
| Phenylpropanoid pathway | 291 | 11 | POD (107) | View species results |
| Flavonoid pathway | 199 | 9 | UFGT (150) | View species results |
| Rosmarinic acid pathway | 113 | 7 | C4H (43) | View species results |
| Steroid pathway | 97 | 13 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1531 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 259 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| FnilGWHABKC000000010013270.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000010015250.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000010016260.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000010016270.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000010025660.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000010025670.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000010047250.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000020088990.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000020094570.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000030122450.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000030123560.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000030125170.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000030129000.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000040139120.1 | Alkaloid | IO | low | borderline |
| FnilGWHABKC000000040139150.1 | Alkaloid | IO | low | borderline |
| FnilGWHABKC000000040168900.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000040177340.1 | Alkaloid | IO | low | borderline |
| FnilGWHABKC000000050179220.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000050179760.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000050196220.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000060217330.1 | Alkaloid | IO | medium | borderline |
| FnilGWHABKC000000060234180.1 | Alkaloid | IO | medium | borderline |