PlantSME Plant secondary metabolism enzyme database

Fragaria nilgerrensis (fragaria_nilgerrensis)

Imported from atlas release summary for Fragaria nilgerrensis.

1502
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.23% Alkaloid pathway 23.17% Phenylpropanoid pathway 19.37% Flavonoid pathway 13.25% Rosmarinic acid pathway 7.52% Steroid pathway 6.46%
Family Distribution
C4H 6.59% C3'H/CYP98A 6.38% BAHD 5.33% UGT 4.4% 7DLGT 4.32% UFGT 4.3% IFS 4.03% CYP76 3.48%
Other Families 61.17%
More Families (96)
T3O 118 3.11% POD 118 3.11% 4CL 117 3.08% F3H 109 2.87% BR6OX2/CYP85A2 88 2.32% F3'H/CYP75B 84 2.21% DWF4/CYP90B1 84 2.21% CAD 72 1.9% CODM/T6ODM 70 1.85% NMT 69 1.82% H6H 59 1.56% STR 55 1.45% LAC 53 1.4% CAS 48 1.27% CYP71 46 1.21% CYP90D1 45 1.19% SMT1/SMT2/SMT3 44 1.16% T16H 43 1.13% SLS 42 1.11% 7DLH 41 1.08% GS 40 1.05% GES 39 1.03% TPS 39 1.03% TRI/TRII 37 0.98% CSE 35 0.92% HCT 35 0.92% IFR 30 0.79% ANR 30 0.79% TAT 29 0.76% SGD 28 0.74% BR6OX1/CYP85A1 27 0.71% F5H/CYP84A 24 0.63% F3'5'H/CYP75A 23 0.61% IO 22 0.58% RAS 22 0.58% PMT 21 0.55% CCR 21 0.55% PYKS 20 0.53% COR 19 0.5% G8O/G8H 19 0.5% CPD/CYP90A1 19 0.5% FNS 18 0.47% COMT 18 0.47% ANS/LDOX 17 0.45% NCS 16 0.42% BBE 16 0.42% CCoAOMT 13 0.34% LAMT 12 0.32% GGPPS 12 0.32% 16OMT 11 0.29% 8HGO 11 0.29% CYP51G1 11 0.29% SQE 11 0.29% HMGR 10 0.26% MPO 9 0.24% PAL 9 0.24% HPPR 9 0.24% ROT3/CYP90C1 9 0.24% DFR 8 0.21% CNMT 7 0.18% FPPS 7 0.18% AACT 7 0.18% CHS 6 0.16% DET2 6 0.16% CYP719 5 0.13% TYDC_DDC 5 0.13% ISY 5 0.13% CPR 5 0.13% SQS/FDFT1 5 0.13% TDC 4 0.11% SMO1/SMO2 4 0.11% MVD 4 0.11% DXS 4 0.11% CYP80B1 3 0.08% 6OMT_4OMT_SOMT 3 0.08% ODC 3 0.08% IDI 3 0.08% MVK 3 0.08% XMT_MXMT_DXMT 2 0.05% ADC 2 0.05% CHI 2 0.05% DWF5 2 0.05% DWF1 2 0.05% PMK 2 0.05% CMK/IspE 2 0.05% HDR/IspH 2 0.05% MCT/IspD 2 0.05% CYP80F1 1 0.03% FK 1 0.03% HYD1 1 0.03% DWF7 1 0.03% CPI1 1 0.03% HDS/IspG 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 454 19 BAHD (166) View species results
Alkaloid pathway 348 20 7DLGT (68) View species results
Phenylpropanoid pathway 291 11 POD (107) View species results
Flavonoid pathway 199 9 UFGT (150) View species results
Rosmarinic acid pathway 113 7 C4H (43) View species results
Steroid pathway 97 13 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1531 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 259 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
FnilGWHABKC000000020088880.1 Alkaloid PYKS low borderline
FnilGWHABKC000000030101950.1 Alkaloid PYKS low borderline
FnilGWHABKC000000030127040.1 Alkaloid PYKS low borderline
FnilGWHABKC000000040141290.1 Alkaloid PYKS high pass
FnilGWHABKC000000040147140.1 Alkaloid PYKS low borderline
FnilGWHABKC000000040147170.1 Alkaloid PYKS low borderline
FnilGWHABKC000000040151050.1 Alkaloid PYKS low borderline
FnilGWHABKC000000040165810.1 Alkaloid PYKS high pass
FnilGWHABKC000000040167290.1 Alkaloid PYKS low borderline
FnilGWHABKC000000040173640.1 Alkaloid PYKS low borderline
FnilGWHABKC000000040176570.1 Alkaloid PYKS low borderline
FnilGWHABKC000000050206330.1 Alkaloid PYKS low borderline
FnilGWHABKC000000060217860.1 Alkaloid PYKS high pass
FnilGWHABKC000000060217870.1 Alkaloid PYKS high pass
FnilGWHABKC000000060225970.1 Alkaloid PYKS medium pass
FnilGWHABKC000000060234320.1 Alkaloid PYKS low borderline
FnilGWHABKC000000060234330.1 Alkaloid PYKS low borderline
FnilGWHABKC000000060237230.1 Alkaloid PYKS low borderline
FnilGWHABKC000000070256640.1 Alkaloid PYKS low borderline
FnilGWHABKC000001310281680.1 Alkaloid PYKS medium pass