Fragaria nilgerrensis (fragaria_nilgerrensis)
Imported from atlas release summary for Fragaria nilgerrensis.
1734
Candidate Protein Records
1502
Pathway-Level Records
3793
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3793
Family-Level Calls
C4H
6.59%
C3'H/CYP98A
6.38%
BAHD
5.33%
UGT
4.4%
7DLGT
4.32%
UFGT
4.3%
IFS
4.03%
CYP76
3.48%
Other Families
61.17%
More Families (96)
T3O
118
3.11%
POD
118
3.11%
4CL
117
3.08%
F3H
109
2.87%
BR6OX2/CYP85A2
88
2.32%
F3'H/CYP75B
84
2.21%
DWF4/CYP90B1
84
2.21%
CAD
72
1.9%
CODM/T6ODM
70
1.85%
NMT
69
1.82%
H6H
59
1.56%
STR
55
1.45%
LAC
53
1.4%
CAS
48
1.27%
CYP71
46
1.21%
CYP90D1
45
1.19%
SMT1/SMT2/SMT3
44
1.16%
T16H
43
1.13%
SLS
42
1.11%
7DLH
41
1.08%
GS
40
1.05%
GES
39
1.03%
TPS
39
1.03%
TRI/TRII
37
0.98%
CSE
35
0.92%
HCT
35
0.92%
IFR
30
0.79%
ANR
30
0.79%
TAT
29
0.76%
SGD
28
0.74%
BR6OX1/CYP85A1
27
0.71%
F5H/CYP84A
24
0.63%
F3'5'H/CYP75A
23
0.61%
IO
22
0.58%
RAS
22
0.58%
PMT
21
0.55%
CCR
21
0.55%
PYKS
20
0.53%
COR
19
0.5%
G8O/G8H
19
0.5%
CPD/CYP90A1
19
0.5%
FNS
18
0.47%
COMT
18
0.47%
ANS/LDOX
17
0.45%
NCS
16
0.42%
BBE
16
0.42%
CCoAOMT
13
0.34%
LAMT
12
0.32%
GGPPS
12
0.32%
16OMT
11
0.29%
8HGO
11
0.29%
CYP51G1
11
0.29%
SQE
11
0.29%
HMGR
10
0.26%
MPO
9
0.24%
PAL
9
0.24%
HPPR
9
0.24%
ROT3/CYP90C1
9
0.24%
DFR
8
0.21%
CNMT
7
0.18%
FPPS
7
0.18%
AACT
7
0.18%
CHS
6
0.16%
DET2
6
0.16%
CYP719
5
0.13%
TYDC_DDC
5
0.13%
ISY
5
0.13%
CPR
5
0.13%
SQS/FDFT1
5
0.13%
TDC
4
0.11%
SMO1/SMO2
4
0.11%
MVD
4
0.11%
DXS
4
0.11%
CYP80B1
3
0.08%
6OMT_4OMT_SOMT
3
0.08%
ODC
3
0.08%
IDI
3
0.08%
MVK
3
0.08%
XMT_MXMT_DXMT
2
0.05%
ADC
2
0.05%
CHI
2
0.05%
DWF5
2
0.05%
DWF1
2
0.05%
PMK
2
0.05%
CMK/IspE
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
CYP80F1
1
0.03%
FK
1
0.03%
HYD1
1
0.03%
DWF7
1
0.03%
CPI1
1
0.03%
HDS/IspG
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 454 | 19 | BAHD (166) | View species results |
| Alkaloid pathway | 348 | 20 | 7DLGT (68) | View species results |
| Phenylpropanoid pathway | 291 | 11 | POD (107) | View species results |
| Flavonoid pathway | 199 | 9 | UFGT (150) | View species results |
| Rosmarinic acid pathway | 113 | 7 | C4H (43) | View species results |
| Steroid pathway | 97 | 13 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1531 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 259 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| FnilGWHABKC000000030115070.1 | Alkaloid | PMT | medium | pass |
| FnilGWHABKC000000030133860.1 | Alkaloid | PMT | medium | borderline |
| FnilGWHABKC000000040150540.1 | Alkaloid | PMT | medium | pass |
| FnilGWHABKC000000040168480.1 | Alkaloid | PMT | medium | pass |
| FnilGWHABKC000000040174160.1 | Alkaloid | PMT | low | borderline |
| FnilGWHABKC000000040174390.1 | Alkaloid | PMT | low | borderline |
| FnilGWHABKC000000050183690.1 | Alkaloid | PMT | medium | borderline |
| FnilGWHABKC000000050186820.1 | Alkaloid | PMT | low | borderline |
| FnilGWHABKC000000050199780.1 | Alkaloid | PMT | low | borderline |
| FnilGWHABKC000000050201600.1 | Alkaloid | PMT | medium | pass |
| FnilGWHABKC000000060240830.1 | Alkaloid | PMT | low | borderline |
| FnilGWHABKC000000060248120.1 | Alkaloid | PMT | medium | borderline |
| FnilGWHABKC000000070256900.1 | Alkaloid | PMT | low | borderline |
| FnilGWHABKC000000070260830.1 | Alkaloid | PMT | medium | pass |
| FnilGWHABKC000000980279670.1 | Alkaloid | PMT | medium | pass |
| FnilGWHABKC000001210281050.1 | Alkaloid | PMT | medium | pass |
| FnilGWHABKC000001430282230.1 | Alkaloid | PMT | medium | pass |
| FnilGWHABKC000000020088880.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000030101950.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000030127040.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000040141290.1 | Alkaloid | PYKS | high | pass |
| FnilGWHABKC000000040147140.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000040147170.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000040151050.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000040165810.1 | Alkaloid | PYKS | high | pass |
| FnilGWHABKC000000040167290.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000040173640.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000040176570.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000050206330.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000060217860.1 | Alkaloid | PYKS | high | pass |
| FnilGWHABKC000000060217870.1 | Alkaloid | PYKS | high | pass |
| FnilGWHABKC000000060225970.1 | Alkaloid | PYKS | medium | pass |
| FnilGWHABKC000000060234320.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000060234330.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000060237230.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000000070256640.1 | Alkaloid | PYKS | low | borderline |
| FnilGWHABKC000001310281680.1 | Alkaloid | PYKS | medium | pass |
| FnilGWHABKC000000010018550.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000010053620.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000010053650.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020057550.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020076880.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020077670.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020085250.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020097460.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020097470.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020097480.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020097490.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020097500.1 | Alkaloid | SGD | medium | pass |
| FnilGWHABKC000000020097510.1 | Alkaloid | SGD | medium | pass |