Fragaria nipponica (fragaria_nipponica)
Imported from atlas release summary for Fragaria nipponica.
1798
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1798
Candidate Genes
C4H
7.18%
C3'H/CYP98A
6.42%
BAHD
5.13%
IFS
4.6%
UGT
4.39%
T3O
4.08%
CYP76
4.03%
7DLGT
3.84%
Other Families
60.31%
More Families (97)
UFGT
163
3.44%
4CL
129
2.72%
POD
125
2.64%
DWF4/CYP90B1
110
2.32%
F3H
102
2.15%
F3'H/CYP75B
96
2.03%
BR6OX2/CYP85A2
94
1.99%
NMT
87
1.84%
CAD
87
1.84%
LAC
82
1.73%
CAS
82
1.73%
TPS
72
1.52%
STR
70
1.48%
GES
66
1.39%
H6H
64
1.35%
CYP90D1
62
1.31%
CYP71
62
1.31%
CODM/T6ODM
60
1.27%
TRI/TRII
54
1.14%
GS
53
1.12%
SMT1/SMT2/SMT3
53
1.12%
BBE
50
1.06%
SGD
48
1.01%
SLS
46
0.97%
T16H
44
0.93%
IFR
38
0.8%
HCT
38
0.8%
G8O/G8H
37
0.78%
IO
36
0.76%
BR6OX1/CYP85A1
36
0.76%
F3'5'H/CYP75A
34
0.72%
COR
32
0.68%
ANR
32
0.68%
F5H/CYP84A
32
0.68%
RAS
29
0.61%
PMT
28
0.59%
CCR
26
0.55%
NCS
25
0.53%
CSE
25
0.53%
COMT
25
0.53%
7DLH
24
0.51%
FNS
24
0.51%
ANS/LDOX
23
0.49%
PYKS
22
0.46%
CYP51G1
21
0.44%
CPD/CYP90A1
20
0.42%
TAT
19
0.4%
LAMT
17
0.36%
SQE
16
0.34%
16OMT
14
0.3%
8HGO
12
0.25%
DFR
12
0.25%
MPO
11
0.23%
CCoAOMT
11
0.23%
ROT3/CYP90C1
11
0.23%
HPPR
10
0.21%
HMGR
10
0.21%
CYP80B1
9
0.19%
CYP719
8
0.17%
ISY
8
0.17%
CNMT
8
0.17%
TYDC_DDC
7
0.15%
CHS
7
0.15%
PAL
6
0.13%
CPR
6
0.13%
DET2
6
0.13%
GGPPS
6
0.13%
FPPS
6
0.13%
ODC
5
0.11%
AACT
5
0.11%
MVD
5
0.11%
TDC
4
0.08%
HDR/IspH
4
0.08%
IDI
4
0.08%
XMT_MXMT_DXMT
3
0.06%
SMO1/SMO2
3
0.06%
DWF1
3
0.06%
MVK
3
0.06%
DXS
3
0.06%
PMK
3
0.06%
FLS
2
0.04%
SQS/FDFT1
2
0.04%
DWF7
2
0.04%
MCT/IspD
2
0.04%
HDS/IspG
2
0.04%
CYP80F1
1
0.02%
ADC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
CHI
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 550 | 20 | UGT (196) | View species results |
| Alkaloid pathway | 439 | 21 | 7DLGT (73) | View species results |
| Phenylpropanoid pathway | 325 | 12 | POD (103) | View species results |
| Flavonoid pathway | 205 | 10 | UFGT (141) | View species results |
| Rosmarinic acid pathway | 165 | 7 | C4H (95) | View species results |
| Steroid pathway | 114 | 12 | CAS (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2029 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 310 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_nipponica_augustus_masked-chr2-processed-gene-26.36-mRNA-1 | Phenylpropanoid | CCR | low | borderline | CCR__00004__sp_G7JEE5_CCR2_MEDTR |
| fragaria_nipponica_augustus_masked-chr4-processed-gene-65.85-mRNA-1 | Phenylpropanoid | CCR | low | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| fragaria_nipponica_augustus_masked-chr5-processed-gene-61.93-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| fragaria_nipponica_augustus_masked-chr7-processed-gene-161.69-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| fragaria_nipponica_augustus_masked-chr7-processed-gene-200.103-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| fragaria_nipponica_maker-chr3-augustus-gene-90.121-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| fragaria_nipponica_maker-chr4-augustus-gene-65.97-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| fragaria_nipponica_maker-chr4-exonerate_protein2genome-gene-156.15-mRNA-1 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| fragaria_nipponica_maker-chr5-augustus-gene-140.17-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| fragaria_nipponica_maker-chr5-augustus-gene-151.147-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| fragaria_nipponica_maker-chr5-augustus-gene-151.148-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| fragaria_nipponica_maker-chr5-augustus-gene-151.151-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| fragaria_nipponica_maker-chr5-augustus-gene-196.61-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| fragaria_nipponica_maker-chr5-augustus-gene-330.10-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| fragaria_nipponica_maker-chr5-augustus-gene-330.8-mRNA-1 | Phenylpropanoid | CCR | low | borderline | CCR__00009__sp_Q9SAH9_CCR2_ARATH |
| fragaria_nipponica_maker-chr5-augustus-gene-356.1-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| fragaria_nipponica_maker-chr6-augustus-gene-247.47-mRNA-1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| fragaria_nipponica_maker-chr6-augustus-gene-33.10-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| fragaria_nipponica_maker-chr6-augustus-gene-80.75-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| fragaria_nipponica_maker-chr7-augustus-gene-161.61-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| fragaria_nipponica_maker-chr7-augustus-gene-161.63-mRNA-1 | Phenylpropanoid | CCR | low | borderline | CCR__00008__sp_Q9S9N9_CCR1_ARATH |
| fragaria_nipponica_maker-chr7-augustus-gene-162.5-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| fragaria_nipponica_maker-chr7-augustus-gene-200.92-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| fragaria_nipponica_maker-chr7-augustus-gene-202.54-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-200.66-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-202.12-mRNA-1 | Phenylpropanoid | CCR | medium | pass | CCR__00001__sp_A0A059TC02_CCR1_PETHY |