PlantSME Plant secondary metabolism enzyme database

Fragaria nipponica (fragaria_nipponica)

Imported from atlas release summary for Fragaria nipponica.

1798
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.59% Alkaloid pathway 24.42% Phenylpropanoid pathway 18.08% Flavonoid pathway 11.4% Rosmarinic acid pathway 9.18% Steroid pathway 6.34%
Family Distribution
C4H 7.18% C3'H/CYP98A 6.42% BAHD 5.13% IFS 4.6% UGT 4.39% T3O 4.08% CYP76 4.03% 7DLGT 3.84%
Other Families 60.31%
More Families (97)
UFGT 163 3.44% 4CL 129 2.72% POD 125 2.64% DWF4/CYP90B1 110 2.32% F3H 102 2.15% F3'H/CYP75B 96 2.03% BR6OX2/CYP85A2 94 1.99% NMT 87 1.84% CAD 87 1.84% LAC 82 1.73% CAS 82 1.73% TPS 72 1.52% STR 70 1.48% GES 66 1.39% H6H 64 1.35% CYP90D1 62 1.31% CYP71 62 1.31% CODM/T6ODM 60 1.27% TRI/TRII 54 1.14% GS 53 1.12% SMT1/SMT2/SMT3 53 1.12% BBE 50 1.06% SGD 48 1.01% SLS 46 0.97% T16H 44 0.93% IFR 38 0.8% HCT 38 0.8% G8O/G8H 37 0.78% IO 36 0.76% BR6OX1/CYP85A1 36 0.76% F3'5'H/CYP75A 34 0.72% COR 32 0.68% ANR 32 0.68% F5H/CYP84A 32 0.68% RAS 29 0.61% PMT 28 0.59% CCR 26 0.55% NCS 25 0.53% CSE 25 0.53% COMT 25 0.53% 7DLH 24 0.51% FNS 24 0.51% ANS/LDOX 23 0.49% PYKS 22 0.46% CYP51G1 21 0.44% CPD/CYP90A1 20 0.42% TAT 19 0.4% LAMT 17 0.36% SQE 16 0.34% 16OMT 14 0.3% 8HGO 12 0.25% DFR 12 0.25% MPO 11 0.23% CCoAOMT 11 0.23% ROT3/CYP90C1 11 0.23% HPPR 10 0.21% HMGR 10 0.21% CYP80B1 9 0.19% CYP719 8 0.17% ISY 8 0.17% CNMT 8 0.17% TYDC_DDC 7 0.15% CHS 7 0.15% PAL 6 0.13% CPR 6 0.13% DET2 6 0.13% GGPPS 6 0.13% FPPS 6 0.13% ODC 5 0.11% AACT 5 0.11% MVD 5 0.11% TDC 4 0.08% HDR/IspH 4 0.08% IDI 4 0.08% XMT_MXMT_DXMT 3 0.06% SMO1/SMO2 3 0.06% DWF1 3 0.06% MVK 3 0.06% DXS 3 0.06% PMK 3 0.06% FLS 2 0.04% SQS/FDFT1 2 0.04% DWF7 2 0.04% MCT/IspD 2 0.04% HDS/IspG 2 0.04% CYP80F1 1 0.02% ADC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% CHI 1 0.02% HYD1 1 0.02% CPI1 1 0.02% DWF5 1 0.02% FK 1 0.02% CMK/IspE 1 0.02% DXR 1 0.02% MDS/IspF 1 0.02% HMGS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 550 20 UGT (196) View species results
Alkaloid pathway 439 21 7DLGT (73) View species results
Phenylpropanoid pathway 325 12 POD (103) View species results
Flavonoid pathway 205 10 UFGT (141) View species results
Rosmarinic acid pathway 165 7 C4H (95) View species results
Steroid pathway 114 12 CAS (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2029 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 310 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMO1/SMO2
Reset
Gene Pathway Family Confidence Status Best Target
fragaria_nipponica_maker-chr3-augustus-gene-113.43-mRNA-1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00003__sp_Q8VWZ8_SMO22_ARATH
fragaria_nipponica_maker-chr5-augustus-gene-357.143-mRNA-1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00002__sp_Q8L7W5_SMO11_ARATH
fragaria_nipponica_maker-chr7-augustus-gene-163.100-mRNA-1 Steroid SMO1/SMO2 medium pass SMO1_SMO2__00002__sp_Q8L7W5_SMO11_ARATH