Fragaria nipponica (fragaria_nipponica)
Imported from atlas release summary for Fragaria nipponica.
1798
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1798
Candidate Genes
C4H
7.18%
C3'H/CYP98A
6.42%
BAHD
5.13%
IFS
4.6%
UGT
4.39%
T3O
4.08%
CYP76
4.03%
7DLGT
3.84%
Other Families
60.31%
More Families (97)
UFGT
163
3.44%
4CL
129
2.72%
POD
125
2.64%
DWF4/CYP90B1
110
2.32%
F3H
102
2.15%
F3'H/CYP75B
96
2.03%
BR6OX2/CYP85A2
94
1.99%
NMT
87
1.84%
CAD
87
1.84%
LAC
82
1.73%
CAS
82
1.73%
TPS
72
1.52%
STR
70
1.48%
GES
66
1.39%
H6H
64
1.35%
CYP90D1
62
1.31%
CYP71
62
1.31%
CODM/T6ODM
60
1.27%
TRI/TRII
54
1.14%
GS
53
1.12%
SMT1/SMT2/SMT3
53
1.12%
BBE
50
1.06%
SGD
48
1.01%
SLS
46
0.97%
T16H
44
0.93%
IFR
38
0.8%
HCT
38
0.8%
G8O/G8H
37
0.78%
IO
36
0.76%
BR6OX1/CYP85A1
36
0.76%
F3'5'H/CYP75A
34
0.72%
COR
32
0.68%
ANR
32
0.68%
F5H/CYP84A
32
0.68%
RAS
29
0.61%
PMT
28
0.59%
CCR
26
0.55%
NCS
25
0.53%
CSE
25
0.53%
COMT
25
0.53%
7DLH
24
0.51%
FNS
24
0.51%
ANS/LDOX
23
0.49%
PYKS
22
0.46%
CYP51G1
21
0.44%
CPD/CYP90A1
20
0.42%
TAT
19
0.4%
LAMT
17
0.36%
SQE
16
0.34%
16OMT
14
0.3%
8HGO
12
0.25%
DFR
12
0.25%
MPO
11
0.23%
CCoAOMT
11
0.23%
ROT3/CYP90C1
11
0.23%
HPPR
10
0.21%
HMGR
10
0.21%
CYP80B1
9
0.19%
CYP719
8
0.17%
ISY
8
0.17%
CNMT
8
0.17%
TYDC_DDC
7
0.15%
CHS
7
0.15%
PAL
6
0.13%
CPR
6
0.13%
DET2
6
0.13%
GGPPS
6
0.13%
FPPS
6
0.13%
ODC
5
0.11%
AACT
5
0.11%
MVD
5
0.11%
TDC
4
0.08%
HDR/IspH
4
0.08%
IDI
4
0.08%
XMT_MXMT_DXMT
3
0.06%
SMO1/SMO2
3
0.06%
DWF1
3
0.06%
MVK
3
0.06%
DXS
3
0.06%
PMK
3
0.06%
FLS
2
0.04%
SQS/FDFT1
2
0.04%
DWF7
2
0.04%
MCT/IspD
2
0.04%
HDS/IspG
2
0.04%
CYP80F1
1
0.02%
ADC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
CHI
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 550 | 20 | UGT (196) | View species results |
| Alkaloid pathway | 439 | 21 | 7DLGT (73) | View species results |
| Phenylpropanoid pathway | 325 | 12 | POD (103) | View species results |
| Flavonoid pathway | 205 | 10 | UFGT (141) | View species results |
| Rosmarinic acid pathway | 165 | 7 | C4H (95) | View species results |
| Steroid pathway | 114 | 12 | CAS (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2029 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 310 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_nipponica_maker-chr6-augustus-gene-19.122-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00001__sp_A0A0C5Q4Y6_C76H2_ROSOF |
| fragaria_nipponica_maker-chr6-augustus-gene-237.20-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| fragaria_nipponica_maker-chr6-augustus-gene-237.22-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| fragaria_nipponica_maker-chr6-augustus-gene-267.71-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr6-augustus-gene-270.9-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr6-augustus-gene-323.103-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr6-augustus-gene-323.104-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| fragaria_nipponica_maker-chr6-augustus-gene-386.117-mRNA-1 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr6-augustus-gene-386.118-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr6-augustus-gene-396.3-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ |
| fragaria_nipponica_maker-chr6-augustus-gene-465.8-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr6-augustus-gene-99.11-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00023__sp_S4UX02_CYPH1_SALMI |
| fragaria_nipponica_maker-chr6-exonerate_protein2genome-gene-269.51-mRNA-1 | Terpenoid | CYP76 | medium | pass | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| fragaria_nipponica_maker-chr6-exonerate_protein2genome-gene-396.23-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr6-exonerate_protein2genome-gene-415.12-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| fragaria_nipponica_maker-chr6-exonerate_protein2genome-gene-415.4-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00024__sp_W0FKI0_DOX1_PERHD |
| fragaria_nipponica_maker-chr7-augustus-gene-116.0-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF |
| fragaria_nipponica_maker-chr7-augustus-gene-116.1-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00005__sp_A0A125QZE2_C76K1_SALMI |
| fragaria_nipponica_maker-chr7-augustus-gene-133.18-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-augustus-gene-16.113-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-augustus-gene-166.104-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00024__sp_W0FKI0_DOX1_PERHD |
| fragaria_nipponica_maker-chr7-augustus-gene-175.108-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF |
| fragaria_nipponica_maker-chr7-augustus-gene-204.0-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-augustus-gene-204.1-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-augustus-gene-204.2-mRNA-1 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-augustus-gene-205.10-mRNA-1 | Terpenoid | CYP76 | medium | pass | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| fragaria_nipponica_maker-chr7-augustus-gene-208.12-mRNA-1 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| fragaria_nipponica_maker-chr7-augustus-gene-250.89-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| fragaria_nipponica_maker-chr7-augustus-gene-250.90-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00016__sp_P0DXJ6_C7631_LOPWI |
| fragaria_nipponica_maker-chr7-augustus-gene-250.92-mRNA-1 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-augustus-gene-252.145-mRNA-1 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-augustus-gene-261.24-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| fragaria_nipponica_maker-chr7-augustus-gene-287.20-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-augustus-gene-295.146-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00018__sp_Q69X58_C76M7_ORYSJ |
| fragaria_nipponica_maker-chr7-augustus-gene-296.79-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| fragaria_nipponica_maker-chr7-augustus-gene-297.15-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-163.53-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-252.55-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-296.56-mRNA-1 | Terpenoid | CYP76 | low | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-297.32-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00018__sp_Q69X58_C76M7_ORYSJ |
| fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-301.32-mRNA-1 | Terpenoid | CYP76 | medium | borderline | CYP76__00024__sp_W0FKI0_DOX1_PERHD |