Fragaria nipponica (fragaria_nipponica)
Imported from atlas release summary for Fragaria nipponica.
2161
Candidate Protein Records
1798
Pathway-Level Records
4734
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4734
Family-Level Calls
C4H
7.18%
C3'H/CYP98A
6.42%
BAHD
5.13%
IFS
4.6%
UGT
4.39%
T3O
4.08%
CYP76
4.03%
7DLGT
3.84%
Other Families
60.31%
More Families (97)
UFGT
163
3.44%
4CL
129
2.72%
POD
125
2.64%
DWF4/CYP90B1
110
2.32%
F3H
102
2.15%
F3'H/CYP75B
96
2.03%
BR6OX2/CYP85A2
94
1.99%
NMT
87
1.84%
CAD
87
1.84%
LAC
82
1.73%
CAS
82
1.73%
TPS
72
1.52%
STR
70
1.48%
GES
66
1.39%
H6H
64
1.35%
CYP90D1
62
1.31%
CYP71
62
1.31%
CODM/T6ODM
60
1.27%
TRI/TRII
54
1.14%
GS
53
1.12%
SMT1/SMT2/SMT3
53
1.12%
BBE
50
1.06%
SGD
48
1.01%
SLS
46
0.97%
T16H
44
0.93%
IFR
38
0.8%
HCT
38
0.8%
G8O/G8H
37
0.78%
IO
36
0.76%
BR6OX1/CYP85A1
36
0.76%
F3'5'H/CYP75A
34
0.72%
COR
32
0.68%
ANR
32
0.68%
F5H/CYP84A
32
0.68%
RAS
29
0.61%
PMT
28
0.59%
CCR
26
0.55%
NCS
25
0.53%
CSE
25
0.53%
COMT
25
0.53%
7DLH
24
0.51%
FNS
24
0.51%
ANS/LDOX
23
0.49%
PYKS
22
0.46%
CYP51G1
21
0.44%
CPD/CYP90A1
20
0.42%
TAT
19
0.4%
LAMT
17
0.36%
SQE
16
0.34%
16OMT
14
0.3%
8HGO
12
0.25%
DFR
12
0.25%
MPO
11
0.23%
CCoAOMT
11
0.23%
ROT3/CYP90C1
11
0.23%
HPPR
10
0.21%
HMGR
10
0.21%
CYP80B1
9
0.19%
CYP719
8
0.17%
ISY
8
0.17%
CNMT
8
0.17%
TYDC_DDC
7
0.15%
CHS
7
0.15%
PAL
6
0.13%
CPR
6
0.13%
DET2
6
0.13%
GGPPS
6
0.13%
FPPS
6
0.13%
ODC
5
0.11%
AACT
5
0.11%
MVD
5
0.11%
TDC
4
0.08%
HDR/IspH
4
0.08%
IDI
4
0.08%
XMT_MXMT_DXMT
3
0.06%
SMO1/SMO2
3
0.06%
DWF1
3
0.06%
MVK
3
0.06%
DXS
3
0.06%
PMK
3
0.06%
FLS
2
0.04%
SQS/FDFT1
2
0.04%
DWF7
2
0.04%
MCT/IspD
2
0.04%
HDS/IspG
2
0.04%
CYP80F1
1
0.02%
ADC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
CHI
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 550 | 20 | UGT (196) | View species results |
| Alkaloid pathway | 439 | 21 | 7DLGT (73) | View species results |
| Phenylpropanoid pathway | 325 | 12 | POD (103) | View species results |
| Flavonoid pathway | 205 | 10 | UFGT (141) | View species results |
| Rosmarinic acid pathway | 165 | 7 | C4H (95) | View species results |
| Steroid pathway | 114 | 12 | CAS (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2029 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 310 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| fragaria_nipponica_maker-chr5-augustus-gene-186.88-mRNA-1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| fragaria_nipponica_maker-chr5-augustus-gene-307.33-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| fragaria_nipponica_maker-chr5-augustus-gene-33.88-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| fragaria_nipponica_maker-chr6-augustus-gene-241.18-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| fragaria_nipponica_maker-chr6-augustus-gene-345.113-mRNA-1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| fragaria_nipponica_maker-chr6-augustus-gene-346.93-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| fragaria_nipponica_maker-chr6-augustus-gene-368.21-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| fragaria_nipponica_maker-chr6-augustus-gene-368.22-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| fragaria_nipponica_maker-chr6-augustus-gene-413.147-mRNA-1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| fragaria_nipponica_maker-chr6-augustus-gene-431.143-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| fragaria_nipponica_maker-chr6-augustus-gene-431.144-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| fragaria_nipponica_maker-chr6-augustus-gene-433.108-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| fragaria_nipponica_maker-chr6-augustus-gene-433.109-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| fragaria_nipponica_maker-chr6-augustus-gene-456.91-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| fragaria_nipponica_maker-chr6-augustus-gene-495.139-mRNA-1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| fragaria_nipponica_maker-chr6-augustus-gene-495.140-mRNA-1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| fragaria_nipponica_maker-chr6-exonerate_protein2genome-gene-241.80-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| fragaria_nipponica_maker-chr7-augustus-gene-253.32-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| fragaria_nipponica_maker-chr7-augustus-gene-37.10-mRNA-1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| fragaria_nipponica_maker-chr7-augustus-gene-74.19-mRNA-1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| fragaria_nipponica_augustus_masked-chr1-processed-gene-33.17-mRNA-1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_nipponica_augustus_masked-chr2-processed-gene-150.11-mRNA-1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| fragaria_nipponica_augustus_masked-chr3-processed-gene-437.32-mRNA-1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_nipponica_maker-chr2-augustus-gene-186.14-mRNA-1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_nipponica_maker-chr2-exonerate_protein2genome-gene-190.78-mRNA-1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_nipponica_maker-chr3-augustus-gene-437.0-mRNA-1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_nipponica_maker-chr3-augustus-gene-437.2-mRNA-1 | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00002__sp_O82415_TYDC_PAPSO |
| fragaria_nipponica_augustus_masked-chr3-processed-gene-450.18-mRNA-1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR |
| fragaria_nipponica_maker-chr2-augustus-gene-284.16-mRNA-1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00001__sp_A0A0S2PM82_TCS3_CAMSI |
| fragaria_nipponica_maker-chr4-augustus-gene-33.123-mRNA-1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00010__sp_Q9FZN8_TCS1_CAMSI |
| fragaria_nipponica_augustus_masked-chr1-processed-gene-235.70-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| fragaria_nipponica_augustus_masked-chr1-processed-gene-240.14-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| fragaria_nipponica_augustus_masked-chr1-processed-gene-243.8-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nipponica_augustus_masked-chr1-processed-gene-243.9-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nipponica_augustus_masked-chr2-processed-gene-11.213-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| fragaria_nipponica_augustus_masked-chr5-processed-gene-329.8-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| fragaria_nipponica_augustus_masked-chr5-processed-gene-333.6-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| fragaria_nipponica_augustus_masked-chr6-processed-gene-114.27-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| fragaria_nipponica_augustus_masked-chr6-processed-gene-396.34-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| fragaria_nipponica_maker-chr1-augustus-gene-235.7-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| fragaria_nipponica_maker-chr1-augustus-gene-245.3-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nipponica_maker-chr1-augustus-gene-245.4-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nipponica_maker-chr1-augustus-gene-69.135-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nipponica_maker-chr1-augustus-gene-70.189-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nipponica_maker-chr1-augustus-gene-70.190-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nipponica_maker-chr2-augustus-gene-23.25-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| fragaria_nipponica_maker-chr2-augustus-gene-231.68-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| fragaria_nipponica_maker-chr2-augustus-gene-313.64-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| fragaria_nipponica_maker-chr2-augustus-gene-90.87-mRNA-1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| fragaria_nipponica_maker-chr2-exonerate_protein2genome-gene-168.35-mRNA-1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |