PlantSME Plant secondary metabolism enzyme database

Fragaria vesca (fragaria_vesca)

Imported from atlas release summary for Fragaria vesca.

2288
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.85% Alkaloid pathway 22.64% Phenylpropanoid pathway 19.97% Flavonoid pathway 11.84% Steroid pathway 8.39% Rosmarinic acid pathway 8.3%
Family Distribution
C4H 6.38% C3'H/CYP98A 5.72% BAHD 5.57% IFS 4.09% UGT 3.97% 4CL 3.79% 7DLGT 3.71% UFGT 3.7%
Other Families 63.07%
More Families (96)
CYP76 193 3.48% POD 182 3.28% F3H 171 3.08% NMT 170 3.07% T3O 158 2.85% F3'H/CYP75B 122 2.2% DWF4/CYP90B1 121 2.18% BR6OX2/CYP85A2 109 1.97% STR 107 1.93% CODM/T6ODM 102 1.84% CAS 101 1.82% CAD 100 1.8% LAC 93 1.68% SMT1/SMT2/SMT3 92 1.66% H6H 80 1.44% CYP90D1 72 1.3% TPS 70 1.26% 7DLH 68 1.23% CYP71 61 1.1% GES 60 1.08% GS 55 0.99% IFR 52 0.94% CSE 52 0.94% TRI/TRII 50 0.9% PMT 48 0.87% HCT 48 0.87% IO 45 0.81% SGD 45 0.81% TAT 45 0.81% SLS 44 0.79% T16H 39 0.7% ANR 37 0.67% BR6OX1/CYP85A1 37 0.67% G8O/G8H 36 0.65% CCoAOMT 28 0.5% RAS 28 0.5% F5H/CYP84A 27 0.49% 8HGO 26 0.47% F3'5'H/CYP75A 26 0.47% CCR 26 0.47% PYKS 24 0.43% COR 24 0.43% SQE 23 0.41% COMT 21 0.38% NCS 20 0.36% LAMT 20 0.36% BBE 20 0.36% FPPS 20 0.36% FNS 18 0.32% CPD/CYP90A1 16 0.29% ROT3/CYP90C1 15 0.27% MPO 14 0.25% CPR 12 0.22% DXS 12 0.22% DFR 11 0.2% CYP51G1 11 0.2% 16OMT 10 0.18% AACT 10 0.18% CMK/IspE 10 0.18% CNMT 9 0.16% ANS/LDOX 9 0.16% GGPPS 9 0.16% HPPR 8 0.14% SQS/FDFT1 8 0.14% TYDC_DDC 7 0.13% ODC 7 0.13% DET2 7 0.13% HMGR 7 0.13% IDI 7 0.13% ISY 6 0.11% CYP719 6 0.11% CHS 6 0.11% PAL 6 0.11% 6OMT_4OMT_SOMT 5 0.09% DWF1 5 0.09% TDC 4 0.07% CYP80B1 4 0.07% DWF5 4 0.07% MVK 4 0.07% PMK 4 0.07% MVD 4 0.07% CHI 3 0.05% SMO1/SMO2 3 0.05% DXR 3 0.05% ADC 2 0.04% DWF7 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% XMT_MXMT_DXMT 1 0.02% HYD1 1 0.02% CPI1 1 0.02% FK 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 660 20 BAHD (253) View species results
Alkaloid pathway 518 22 7DLGT (106) View species results
Phenylpropanoid pathway 457 11 POD (178) View species results
Flavonoid pathway 271 11 UFGT (189) View species results
Steroid pathway 192 15 CAS (84) View species results
Rosmarinic acid pathway 190 7 C4H (75) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2108 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 385 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
Fves02G0020480.1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
Fves03G0031270.1 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
Fves05G0043910.1 Alkaloid CYP719 medium borderline CYP719__00004__sp_B1NF20_C719E_ARGME
Fves06G0035870.1 Alkaloid CYP719 medium borderline CYP719__00005__sp_B5UAQ8_C7195_ESCCA
Fves07G0012690.1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
Fves07G0024930.1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME