Fragaria vesca (fragaria_vesca)
Imported from atlas release summary for Fragaria vesca.
2288
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2288
Candidate Genes
C4H
6.38%
C3'H/CYP98A
5.72%
BAHD
5.57%
IFS
4.09%
UGT
3.97%
4CL
3.79%
7DLGT
3.71%
UFGT
3.7%
Other Families
63.07%
More Families (96)
CYP76
193
3.48%
POD
182
3.28%
F3H
171
3.08%
NMT
170
3.07%
T3O
158
2.85%
F3'H/CYP75B
122
2.2%
DWF4/CYP90B1
121
2.18%
BR6OX2/CYP85A2
109
1.97%
STR
107
1.93%
CODM/T6ODM
102
1.84%
CAS
101
1.82%
CAD
100
1.8%
LAC
93
1.68%
SMT1/SMT2/SMT3
92
1.66%
H6H
80
1.44%
CYP90D1
72
1.3%
TPS
70
1.26%
7DLH
68
1.23%
CYP71
61
1.1%
GES
60
1.08%
GS
55
0.99%
IFR
52
0.94%
CSE
52
0.94%
TRI/TRII
50
0.9%
PMT
48
0.87%
HCT
48
0.87%
IO
45
0.81%
SGD
45
0.81%
TAT
45
0.81%
SLS
44
0.79%
T16H
39
0.7%
ANR
37
0.67%
BR6OX1/CYP85A1
37
0.67%
G8O/G8H
36
0.65%
CCoAOMT
28
0.5%
RAS
28
0.5%
F5H/CYP84A
27
0.49%
8HGO
26
0.47%
F3'5'H/CYP75A
26
0.47%
CCR
26
0.47%
PYKS
24
0.43%
COR
24
0.43%
SQE
23
0.41%
COMT
21
0.38%
NCS
20
0.36%
LAMT
20
0.36%
BBE
20
0.36%
FPPS
20
0.36%
FNS
18
0.32%
CPD/CYP90A1
16
0.29%
ROT3/CYP90C1
15
0.27%
MPO
14
0.25%
CPR
12
0.22%
DXS
12
0.22%
DFR
11
0.2%
CYP51G1
11
0.2%
16OMT
10
0.18%
AACT
10
0.18%
CMK/IspE
10
0.18%
CNMT
9
0.16%
ANS/LDOX
9
0.16%
GGPPS
9
0.16%
HPPR
8
0.14%
SQS/FDFT1
8
0.14%
TYDC_DDC
7
0.13%
ODC
7
0.13%
DET2
7
0.13%
HMGR
7
0.13%
IDI
7
0.13%
ISY
6
0.11%
CYP719
6
0.11%
CHS
6
0.11%
PAL
6
0.11%
6OMT_4OMT_SOMT
5
0.09%
DWF1
5
0.09%
TDC
4
0.07%
CYP80B1
4
0.07%
DWF5
4
0.07%
MVK
4
0.07%
PMK
4
0.07%
MVD
4
0.07%
CHI
3
0.05%
SMO1/SMO2
3
0.05%
DXR
3
0.05%
ADC
2
0.04%
DWF7
2
0.04%
HDR/IspH
2
0.04%
HMGS
2
0.04%
XMT_MXMT_DXMT
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 660 | 20 | BAHD (253) | View species results |
| Alkaloid pathway | 518 | 22 | 7DLGT (106) | View species results |
| Phenylpropanoid pathway | 457 | 11 | POD (178) | View species results |
| Flavonoid pathway | 271 | 11 | UFGT (189) | View species results |
| Steroid pathway | 192 | 15 | CAS (84) | View species results |
| Rosmarinic acid pathway | 190 | 7 | C4H (75) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2108 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 385 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Fves01G0002640.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves01G0006850.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves01G0006850.2 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves01G0006850.3 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves01G0006850.4 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves01G0008260.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves02G0031990.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Fves04G0026750.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Fves04G0026800.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Fves04G0028750.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Fves04G0029390.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Fves05G0023050.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves05G0023050.2 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves05G0023050.3 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves05G0024220.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves06G0015470.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves06G0015500.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves06G0015510.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Fves07G0033530.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Fves07G0033540.1 | Alkaloid | NCS | medium | pass | NCS__00004__sp_Q4QTJ2_NCS1_PAPSO |